Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 8.6e-07 0.0029 19.1 0.1 1 38 12 48 12 54 0.89

2 4 1.8e-12 6e-09 37.3 0.1 3 39 64 99 62 103 0.91

3 4 0.0017 5.9 8.5 0.0 21 35 132 146 118 154 0.81

4 4 9.8e-12 3.3e-08 34.9 0.0 3 39 175 211 173 215 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	8.6e-07	0.0029	19.1	0.1	1	38	12	48	12	54	0.89
2	4	1.8e-12	6e-09	37.3	0.1	3	39	64	99	62	103	0.91
3	4	0.0017	5.9	8.5	0.0	21	35	132	146	118	154	0.81
4	4	9.8e-12	3.3e-08	34.9	0.0	3	39	175	211	173	215	0.92

Coding Sequence: ATGCCACCTGTAAATGTGACAGAATATCTGAAGAGTGAAGATGCGCTTTTGGCTGCACTGCAAGAACTACAGTCCGGGCGATCCCTGGTGGATGTTGCCACAGCATATCATATACCACGCTCCACTTTGTATGTCAGGGCACGCACCAAAGGTATCTCATTGACTATTCCAAGACAGGAGCATACAGCAGAGAATGTTCAGGCTGCACTTCAAGCAGTGGCAGGTGGTGCAAGTTTACAGCAAGCTGCAAGGCAGTATAAAATCCCGAAGACAGTTCTCTGGCGGAGAGTTCAGAAAGAAATGAGAAACTACCAAGGACGTGCAAAACGATCATATTGCTTACAGGCAAAAATAGCAGCAGTTAAAGCTCTGGAACGTGGTGAAAACCTTACTAGAGTGGCTCAAAAATATCAGatACCCAAAACTACATTATTTCGAGAGAAAGCACGTTTAGTGGAATCAGGAAAATTACCATGGACATGTCTTAAGAGAAAACAGCCAGATACTGAGGGATTTAGAGAGCATCGGCTTGTAGAAGCTGTTAATGCATGTAAAGAAGGGAAGATGTCACAAGCTGTTGCATCCCTTACATATCAGGTTCCAAAAACAACGATCTGGAGGCGACTTCAGCAAGGATCACAAAATCTATCTAAGCCTgtagaaaaattagaagaaaatttaagaaatgaaacagaGAAGATGCCAATGTTACAGGAGCAGCCGGAACAATTTCCAATATTCACtgaggtATCAGAAGAGGTTCCAGCTACATATGTTACAGGATCTGATTTTGCAGATACTTCACTTATTATCCTCACCTCTGGTGAAAACAACAATATCATTGCTATTGGTGATAATGGCACTGCCAATTTGGTAAgttaa
Protein Sequence: MPPVNVTEYLKSEDALLAALQELQSGRSLVDVATAYHIPRSTLYVRARTKGISLTIPRQEHTAENVQAALQAVAGGASLQQAARQYKIPKTVLWRRVQKEMRNYQGRAKRSYCLQAKIAAVKALERGENLTRVAQKYQIPKTTLFREKARLVESGKLPWTCLKRKQPDTEGFREHRLVEAVNACKEGKMSQAVASLTYQVPKTTIWRRLQQGSQNLSKPVEKLEENLRNETEKMPMLQEQPEQFPIFTEVSEEVPATYVTGSDFADTSLIILTSGENNNIIAIGDNGTANLVS

Sequence clustering based on sequence similarity using MMseqs2