Basic Information

Insect: Metalampra italica
Gene Symbol: -
Assembly: GCA_949699065.1
Location: OX452997.1:3215185-3219170[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.055 3.1 8.7 0.2 1 23 278 301 278 301 0.98

2 9 0.1 5.9 7.9 2.2 2 23 324 346 323 346 0.95

3 9 0.0023 0.13 13.1 0.6 1 23 350 372 350 372 0.98

4 9 0.08 4.6 8.2 4.9 1 23 377 400 377 401 0.96

5 9 0.034 1.9 9.4 0.3 2 23 408 430 407 430 0.90

6 9 0.00053 0.03 15.1 4.7 1 23 437 460 437 460 0.96

7 9 0.0004 0.023 15.4 0.9 1 23 466 488 466 488 0.97

8 9 0.00023 0.013 16.2 0.4 1 23 494 516 494 516 0.98

9 9 0.23 13 6.7 6.9 1 23 522 545 522 545 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.055	3.1	8.7	0.2	1	23	278	301	278	301	0.98
2	9	0.1	5.9	7.9	2.2	2	23	324	346	323	346	0.95
3	9	0.0023	0.13	13.1	0.6	1	23	350	372	350	372	0.98
4	9	0.08	4.6	8.2	4.9	1	23	377	400	377	401	0.96
5	9	0.034	1.9	9.4	0.3	2	23	408	430	407	430	0.90
6	9	0.00053	0.03	15.1	4.7	1	23	437	460	437	460	0.96
7	9	0.0004	0.023	15.4	0.9	1	23	466	488	466	488	0.97
8	9	0.00023	0.013	16.2	0.4	1	23	494	516	494	516	0.98
9	9	0.23	13	6.7	6.9	1	23	522	545	522	545	0.98

Sequence Information

Coding Sequence: atgaatgaacatTCCGTTGGAAACATGCAATATTTAGACAAGTGCAAGTGTTGCCTCGAACAGGGGCGTTTGAGGAGTATGTGGGATGAATATGTTCGAGACGGCAAGAGAGAAATCTATGGCGAAATGTTGACGAATTGTTTTGCTCTGGTCTGGCAGCGACCTGAACATGAGGAGAGAATCTGTGAGCTGTGCGTGGGAAGGCTCCGGAACGCTATCACTTTCAAAGAACAAGTGATGTCCACGGAACAACTGCTGTTAGACCAGATGCAagAGGACCTGGTGTTTGGCGATGTAAGGATCACCAAAGTGAAAAGCGATGTTGGCAACGCTGATGTTGAACACGAAGAAAAACCAATGGTAAGATCAAAACATAACGCTGACGTCACAGGCGACCACTCTTATACAGAAGAATTTATAACAGACAGCAATCACTCTTACACAGAAGAATTTATAACAGACAGCATAGAAGAAATAGCCAGTACAGACATCGCAGCAGAAAACGAGGAGGAAGTAGAAACAACTGTGCAGGAATCAAAAAAACGGAAAACTGTAACACAGAGACCAATATTGCGTTATCAGCTGTATGATAAGAATCCTGAAAGAGAGCAGCATCAGGACAACCTCCGAACCCTACTGCTGTGCACCAACGCCACGCCGATCAGGAAACGCACCGACGGTGGATACATGTGCGCCTTCTGCAACGATCAGTTCCTGGCCCCGGCTGAACTCAAGCAGCACACAATAGAAGCCCACGACAACTTAACCAAAGCGAAATACATGAAAGAGATTGGTCTGTCGACGTTCTCCGTCAAATTGGACATATCTCGGTTTGAATGCAAACTGTGTAATGAAAATATCTACTCTCTGGAAGATATGTTGGAGCATCTGAAAACGGTGCACAAGAAAAAGGTCCATTTGGACATAGTAAACTATATGATTCCGTTGAAATTTGAAACGGAAGGGCTGAGGTGTTACATGTGCGGCAGCGAGTTCATGTTTTTCAAGTTGTTGACGCACCATATGACCAGCGTTCATTACAAGAACTTTAAATGCGAACCGTGCAACATTTACTTCATCAACAATCGTGCTTTGCGCAACCACGCCCGGAGGCACGCTTCCGGAGAGTTCCACTGCTCGTACTGCCCGAAGATCTTCGATGCGAGAATAAAAGTGACCCATCACGAGAGGACGGTGCATCACCTCGGCAGATACGTCATCCCGTGTGGCTTGTGCGATGAAAAGTTCAAAGACAACGAGAAGAAACTGAAGCATTTGGAAGACCAGCACGGTATCGAGGCACCCATGTACAAATGTGACAGGTGCGAGAGGGAGTTTCACAGAAAGAAGAGTTTGAAGCGACACGTTGAGTCGTTTCATTTGTTCATGACGAAGTATAAATGCGACGAGTGCCAGAGGGAGTTCTATGAGAAGCGCTCGTTCGAAGCGCACTTGGTGTCGCACAGTAAGGTGAAAGCGTATGAATGTGAGGTGTGCAAGAGAAAGTTCGGGGTGAAGTGGAGCCTGGAGCTGCACCGGAAGATACATTACGAGAAGCCGAAGTACAAGTGCAGACATTGTGGCCACGGGTCGGTGCAAAAGAACTGCTGGCGTTTGCATATGCTGAGAAAGCATAATGAAAAAGTTTAG
Protein Sequence: MNEHSVGNMQYLDKCKCCLEQGRLRSMWDEYVRDGKREIYGEMLTNCFALVWQRPEHEERICELCVGRLRNAITFKEQVMSTEQLLLDQMQEDLVFGDVRITKVKSDVGNADVEHEEKPMVRSKHNADVTGDHSYTEEFITDSNHSYTEEFITDSIEEIASTDIAAENEEEVETTVQESKKRKTVTQRPILRYQLYDKNPEREQHQDNLRTLLLCTNATPIRKRTDGGYMCAFCNDQFLAPAELKQHTIEAHDNLTKAKYMKEIGLSTFSVKLDISRFECKLCNENIYSLEDMLEHLKTVHKKKVHLDIVNYMIPLKFETEGLRCYMCGSEFMFFKLLTHHMTSVHYKNFKCEPCNIYFINNRALRNHARRHASGEFHCSYCPKIFDARIKVTHHERTVHHLGRYVIPCGLCDEKFKDNEKKLKHLEDQHGIEAPMYKCDRCEREFHRKKSLKRHVESFHLFMTKYKCDECQREFYEKRSFEAHLVSHSKVKAYECEVCKRKFGVKWSLELHRKIHYEKPKYKCRHCGHGSVQKNCWRLHMLRKHNEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -