Mita017146.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452992.1:3857364-3868055[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.086 4.9 8.1 3.1 1 23 271 293 271 293 0.98 2 12 0.73 42 5.2 5.1 1 23 301 324 301 324 0.94 3 12 0.00069 0.04 14.7 2.5 1 23 426 448 426 448 0.99 4 12 0.0081 0.47 11.3 2.3 2 23 457 479 456 479 0.96 5 12 0.76 44 5.1 4.7 1 23 483 505 483 505 0.98 6 12 0.00028 0.016 15.9 3.3 1 23 510 533 510 533 0.98 7 12 2.5 1.4e+02 3.5 2.0 1 19 537 555 537 560 0.76 8 12 0.085 4.9 8.1 0.4 1 20 579 598 579 600 0.94 9 12 0.27 16 6.5 0.5 3 23 648 669 646 669 0.89 10 12 3.5e-06 0.0002 21.9 1.3 1 23 678 700 678 700 0.98 11 12 0.00076 0.044 14.6 0.8 3 23 708 728 706 728 0.96 12 12 5.8e-06 0.00033 21.2 2.6 1 23 734 757 734 757 0.98
Sequence Information
- Coding Sequence
- atgtGGGATCTAAAAGCGTGTCGGGTGTGCTTCAGAGCGGATGggaaattacataaaatcgACAGCGGACAATTGAAACGAGAATTCTACTTGGTATCCGGTCTCAAGGCGACTGATAGTGAAGGTATGCCACAATATTTATGTGTGGAGTGCTCAGCACACGTGAGGAGGTCCAGAAAGTTCAGGGATAAATGTATGAGAGCCCACTTCGCATTGAAGGAAATTTTAACAAGGAATAAAGAGataaaattatcaaatttaGTGACTTTGGACTGTCAACAAATAGACAATGGGTCAGATTTATCATATTTAGACCTGAATAAAACTCATTATGAAGAAACCAAGTTCCATTGGCAAAGACACAACCGACTTAACCTTGCAAAAGTCAACGCAAATATGGGAATATTCTACTGCAGTACAGTGAGATTAGAAGATGAGTTCGAAGTGCCTAACAAGAAACAGAAACTTTCAAACTCTGTCGatgaaaatattgttaaaGTAGAGAATGATCAACCATATAACAGTTTACAAACAGAGTTTGAGTTAGACGACAGGAAAGTTCAGGAGTATCTTGACCCAGCATTATTGGCTGTTGATACAGAGGCGGAAGGCACatcagaaaaatattttgataattatgacAGTGACAATGTTCAAGAGGTAGACGACAGCTATCCATGTAAAGAGGAGGTCACGAGTGAACAAGCTGACGGTACCAATTTGGATGAAGAATATGCCAGTATCGTTCCAATATCAGAGAATGAAGCTAAAGCAGCTTCTGAAGTGTACAAAATGTTCAGTAATGGCAAGTTTCGTTGTTCCACTTGCAAGAAATCATATCTCAATGAGAATcgttacaaaatacatttgcGTATGCATGATCCACACACAAGTGGTAGTTACTTCTGTTCGCTGTGCCATTTCTACTACAAGACTGACTTCCTGCTGAAGACCCACATGACAGAGAAACATCTGTACAAGTATCTGTGTAGAAAATGtccagaagtcaactttgatAGGATATCGGCAAAGCAACACTTCATATGGACGCATCTACAGAAGGGCAATAAGCGGAACTCCAACTGGTACGACTCGCGGCCCACCTGGCTCAGCCCCAGGGGGGGCAAGCGGGTCAAGGGGATCGTCTCCCTGCGCCCCGTCAGGAAAATCAACAAGCTACCACCGGACTTTCCTATGTATTCTCCCGTCAGCCAAGTGGAGCAGTACGCGCTGGTGCGCGAGCGCATGAAGACGCGCAACTACACGGAGGCGCAGTACAAGTGCCAGTTCTGCTACAAGGGGTTCAGGGAGGCGGAGACGTACGGCAAGCATATGAGGAAACATGATCCGGCGTTGTCAGGCCCGATGCAGTGTGACATGTGCAAGCTTCACTTCCGCGACGCGCGTAAAGTCTACAAGCACATGAACATCACGCATCTCTTCAAGTACTCCTGTCAGATGTGCACGTACGTCTGCTACAACAGGGGCCAGGCGCACATGCACTACAGGTGGCACAAAAACGTCACGTACCAGTGTCCACACTGCAAGAGAGACTTTAAGAAAGCGTCGACGCGTCTAACCCACATCCGTATAAAGCACCCATCCACGTACATCTGCAACCTGTGCGGCCACAGCTACGTGAGCGACAACGGCCTCTACTGCCACAAGAAGCTCGCCCACAGTGCAGAGGAGATAGAGGCGAGCGAGGCGACGCCGGTGGACACGGGCGACGAGCACTACTGCGCGGACTGCAACGTGCACTTCGTGTCGGAGGGCGCGTACAAGACCCACCTCGGCAGCTCCAACAAGCACGCCAGCACCAACGTCTCCGTGAAGCCACACCGTCTgctgcgcgcggcggcggagcGCAAGCGCCGCGGGCGGCCGCGCGCAAACTGCTCCTCGGAGATCGTCAACAACGGCCTGCCCACTTCCACGCACTGCGAAGTGTGCGGCAAGTTCCTAAGCAACGACGTGCAGGCGCGCAAGCACTACGAGGCGGAGCACCCCGGGGCGGAGTTCCTCAAGCGGTACATGTGCGACGTGTGCGGACACACCACCAAGCAATACGCGAACCTGATGGTGCACATGCGCACGCACACCAACGAGAAGCCTTACGGGTGCCCGCACTGCGACCGCCGGTTCAGCATGCCCAGCAACCGAGACCGGCATCTTGTCGTGCATACCGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGGTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGGACAAGAAGAACAGGAAGCGGCGCAAGGAGATGGAGGCGACCTCCGCTATAGTGACCGCGATGGCGTCCACCAGCCTCCAGCCGCCGCCGTCCAAGCTGCTGCTCGACGCGCAGGGCGACTACCTCAACGCGTACATCTCCTACAACGACGAGTGA
- Protein Sequence
- MWDLKACRVCFRADGKLHKIDSGQLKREFYLVSGLKATDSEGMPQYLCVECSAHVRRSRKFRDKCMRAHFALKEILTRNKEIKLSNLVTLDCQQIDNGSDLSYLDLNKTHYEETKFHWQRHNRLNLAKVNANMGIFYCSTVRLEDEFEVPNKKQKLSNSVDENIVKVENDQPYNSLQTEFELDDRKVQEYLDPALLAVDTEAEGTSEKYFDNYDSDNVQEVDDSYPCKEEVTSEQADGTNLDEEYASIVPISENEAKAASEVYKMFSNGKFRCSTCKKSYLNENRYKIHLRMHDPHTSGSYFCSLCHFYYKTDFLLKTHMTEKHLYKYLCRKCPEVNFDRISAKQHFIWTHLQKGNKRNSNWYDSRPTWLSPRGGKRVKGIVSLRPVRKINKLPPDFPMYSPVSQVEQYALVRERMKTRNYTEAQYKCQFCYKGFREAETYGKHMRKHDPALSGPMQCDMCKLHFRDARKVYKHMNITHLFKYSCQMCTYVCYNRGQAHMHYRWHKNVTYQCPHCKRDFKKASTRLTHIRIKHPSTYICNLCGHSYVSDNGLYCHKKLAHSAEEIEASEATPVDTGDEHYCADCNVHFVSEGAYKTHLGSSNKHASTNVSVKPHRLLRAAAERKRRGRPRANCSSEIVNNGLPTSTHCEVCGKFLSNDVQARKHYEAEHPGAEFLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEMEATSAIVTAMASTSLQPPPSKLLLDAQGDYLNAYISYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00674627;
- 90% Identity
- -
- 80% Identity
- -