Mita019687.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:4515117-4525441[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00011 0.0064 17.2 1.2 1 23 237 259 237 259 0.98 2 10 0.46 26 5.8 3.8 1 23 266 288 266 288 0.97 3 10 0.73 42 5.2 3.2 1 23 292 314 292 314 0.95 4 10 0.0012 0.068 14.0 3.4 1 23 319 341 319 342 0.96 5 10 0.013 0.72 10.7 0.2 1 20 372 391 372 393 0.96 6 10 0.043 2.5 9.1 0.0 3 23 406 427 405 427 0.94 7 10 1.2 70 4.5 0.1 3 23 536 556 534 556 0.94 8 10 1e-05 0.0006 20.4 4.2 1 23 562 584 562 584 0.98 9 10 0.00037 0.021 15.6 0.5 1 23 590 613 590 613 0.95 10 10 8.5e-05 0.0049 17.6 1.7 1 23 619 642 619 642 0.97
Sequence Information
- Coding Sequence
- atgGATGAAATAGAGGTGCAATCGGTGTGCGAGGATCTGCACGCTTGCCGCGTGTGCCTCGCGACCGACGTGAGGCTGGAGGCTCTGTACCCTGGGCCGCTGGCGGAGACATACGAGCAGCTCACTGGGGCGCCGGTGTCACCAACAGATGGGTTGCCACAGCACCTGTGCAGCATGTGCGCTGCTTTACTCAAGAAGTCGGCTGCTTTCCGAAGCAAATGTCTTAACACACTGGTCTTCCTGCAGATGGTTAGTCGACAGCTGCAGCCATTAGGCTTATCATTGTCTAAAACTGAGatCACAATGCCTCTAATCCGTAATCTAGacagaaaatatttacaactaCCATACGTTACATCTGAGATGTTGACTGTTAGCGCACTTGGTGATAGCAGTAATACGATCACGAACGAAATACCTGTAATAGAGTTAAAAGAAGAAGAGAGTGAAGAAGATTGTGTGCTGGACTGTGAATCACCAGTAGAACAGTCtgaagaagaagaaatatTTACAGATTTAAAGATTACTGAAACTATAAACCTAATCAAATCTAATGCGGAAGCATATGATCCTTATCCAACATTGTTGTATGATGATGTGCTTGAGATTAAAGAAAGCAGTTGCAAAGTTGAATGCGATATGTTTGATTCTGATACAGAAAATCTGGAACAGTCCAATAAGAAGTGTTTGTTGTATCAGAAGAGGAGATTTAAATGTGAGGAGTGTTTCAAAGGATTCGCATCGGaaactacttataaaaatcaTATGACTGTGCACGACCCAGCCAGCGGCAGCCACGTGTGCGAGGTGTGCAAGCACCGGTACCCCACGGTGCGCAAGCTGGGAAAACACAAATTGAGGCACAGGACGAAGTTTGTCTGCAGGGAATGCCAGCAGTGCTTCAACGAAATCACTCGGGCGAGGGAGCACTACAAGACCCACAAGGGCGTCAGCTACGAATGCCAGCACTGCGACGCCACGTTCAGGAAGTACGCCTCCCGCGTGAACCACATCCGGATCCACCACGGCGCGACCGCCTGCGACATCTGCTACCAGGGGTTCCAGGGAGCCAACGGAATGTTGCTGCATAAGACATTAGCGCACAAAAAGACGTACCAGTGCGCGTCGTGTGACGTGCACTTCGACAACGCGCACGCCATGACAAGGCACATAGGCTCGTCCCCCGACGGCGCTTGCGATCCCAATATAAGGGCGTGCGCCAAGTGCGGCGAGCCGTGCGCCTCCGCCGAGCAGCTCGACGCGCacgtggcgcgcgcgcacgcggggaggccccgcccgccgcggggGAGGCGCGTCGGAAACGGCTCATATAAGAGTTGCAACGCAGAGAAGAAGAAAAGGATGGAACGCAAATGCTGTGGTTGTCCCCATTCTGAAGTTGGGGACGGGGAAAGCGTTGTACCCAATAGTGGGTCGTGCCCCTGCGGCGACGGGGAGGACGAGTGCCTCTGCCCGCTGGGCTCGGTTCGCAGCTGCTGGCTGGCGGACCGGAGCCCTGTATACGTGGGCGGGGTGCTCCGCAAGCACAGGTGGGCCCACACGGGGTGCTGCCATGAACGGAGGCTGAATGAAAGGGCAGTGATGTGCGAAATGTGCGCGCATACAGTTCAGTCGGGTGCTGCATTGAGGGCACACCAGCTCGTCCACACCGAGGAGAAGCCGTTCGAGTGCAGCGAGTGTCACAAACGATTCCGGCTGAAAGAGTACCTCCAGACGCACATGAACTCCCACACCGGAGAGCGGCCCTTCAAGTGCCCGCTCTGCCCCAAGGCGTTCACGACGGTCGTGAACAGATACAGGCACCGGCTGCAAGTGCACTCGCAGACACGGCCGCACAGCTGCGAGGTGTGCGCCAAAACGTTCAAAACATCTACAGATGTTAAGACGCACGTGCGGACCGTGCACATGAAGATGCCACAgccgcggcgcgtgcgcaacCGGAAGCGGAAGATTGAATGTACCGACAGTCAATGA
- Protein Sequence
- MDEIEVQSVCEDLHACRVCLATDVRLEALYPGPLAETYEQLTGAPVSPTDGLPQHLCSMCAALLKKSAAFRSKCLNTLVFLQMVSRQLQPLGLSLSKTEITMPLIRNLDRKYLQLPYVTSEMLTVSALGDSSNTITNEIPVIELKEEESEEDCVLDCESPVEQSEEEEIFTDLKITETINLIKSNAEAYDPYPTLLYDDVLEIKESSCKVECDMFDSDTENLEQSNKKCLLYQKRRFKCEECFKGFASETTYKNHMTVHDPASGSHVCEVCKHRYPTVRKLGKHKLRHRTKFVCRECQQCFNEITRAREHYKTHKGVSYECQHCDATFRKYASRVNHIRIHHGATACDICYQGFQGANGMLLHKTLAHKKTYQCASCDVHFDNAHAMTRHIGSSPDGACDPNIRACAKCGEPCASAEQLDAHVARAHAGRPRPPRGRRVGNGSYKSCNAEKKKRMERKCCGCPHSEVGDGESVVPNSGSCPCGDGEDECLCPLGSVRSCWLADRSPVYVGGVLRKHRWAHTGCCHERRLNERAVMCEMCAHTVQSGAALRAHQLVHTEEKPFECSECHKRFRLKEYLQTHMNSHTGERPFKCPLCPKAFTTVVNRYRHRLQVHSQTRPHSCEVCAKTFKTSTDVKTHVRTVHMKMPQPRRVRNRKRKIECTDSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -