Mita018713.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452996.1:5387086-5392640[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6 92 4.1 2.0 1 23 274 297 274 297 0.93 2 13 0.05 2.9 8.9 0.0 2 23 304 325 303 325 0.96 3 13 0.8 46 5.1 0.3 2 19 342 359 341 362 0.82 4 13 0.0054 0.31 11.9 0.0 1 21 371 391 371 392 0.94 5 13 0.13 7.5 7.5 0.0 2 23 414 436 413 436 0.94 6 13 0.0051 0.29 12.0 0.7 2 23 471 492 470 492 0.97 7 13 0.018 1 10.3 0.1 3 21 500 518 499 519 0.92 8 13 0.0046 0.26 12.1 1.3 2 23 566 587 565 587 0.97 9 13 0.00056 0.032 15.0 2.3 1 23 595 617 595 617 0.98 10 13 0.0056 0.32 11.9 3.5 2 23 623 644 623 644 0.97 11 13 0.012 0.68 10.8 3.0 1 23 650 672 650 672 0.96 12 13 0.008 0.46 11.4 4.2 1 23 678 700 678 700 0.94 13 13 0.00048 0.027 15.2 2.8 1 23 706 729 706 729 0.96
Sequence Information
- Coding Sequence
- ATGGAAGATCCATTGGAGATTGCTATCAGAACGACTCACTGTCGCTTTTGCGGCGAATCGAAAAATTACACAGAAGTATTAGATTTGGCCGGCGATCTAAAAACATTAAGTGAATatttaagaataataaaattcctCAAAATAGACTACTTGGACCTGTCGCAGACGAATAAACTGCCCAAAAGCACGTGCGAAACGTGCTACGATCAATTCCAAGAGGCCTAtaaatttttccaaaaaatcaaCGAGATTCACTCGTATTTCAAAAAATGCAAAGTTGTCAATATTAAGACAGAGCCCATTTGTGAAGCAAACAGTGACAAAGGAACAGAAGACGCTGGCGCCAATTCCAATGATTCAATTATGCAAAATGAGAAATGTGATGAATTGGAAACGGATAAAAATTCAACACCTGCTAACAGTGGCTGTGCGACAGAGCTCTGTATTTTCTGCAGCGAACAAAAAACCTCTGACAACCTCGTAAACCCATCAGAAAAAACGTTAGCGGAAGATCTTACGGAAATGGTGGACTATTTCAAAATGGATCACCTGGCACACAAGATTAAACTGGCAAAGACCTCGTGCGAGCCTTGCTATAGAACTCTTCACAACGCTTACAATTTCTTCAAAAACGTTGAGCGCAACCAGAGTTTATTAGAAGACATTTACTGTACCAAATCGCTACTTCATGCATTATTAGTTAAAGTCGAGATAGAGCCTTGTTCCAGTGACAGTAAAGAATCTCCAAACAAAGATACTAACCCGTTGTCTCTATGCGCTATAACTATACAAGACGATGAGTCCTGGACGAATTACACGTACATCTGCTGCCATTGTCGGATAATGGTTGACAACATGGAGGAGCTGAGAGTGCACAGTAAGGAGAGGCACAACGTCTGCTACGCTCTGAGATGTGCCGATTGTGACGAGCAGTTCGTCGGGTACAACGAGTTTGTCGAACATGTTCGCGGTCACAGAGATGTTTTGAGCCCGTTGAGCAATTTCAAGAGCGGTTTCAGGCTGTACTGCCAGTACTGCAACATGCGGTTCGAGAGCGCGGCGCAGTGCGTGCAGCACGTGCTGGTGGTGTGCGCGCCCGCGCCAGCGCAGCACGTGTGCGAGCAGTGCGGGGAGGCGCTGCCGCACGCCAGCGCGCTCGAGTGGCACCGTAAGCTGtacggcggcgccgccgcgcagaGCCGCGCCAAGCACACGGGCTCCTGGGAGGACTACCAGTGGATTTGTcagGAATGCGGCGTGCAGACGGCGGACGTGGAGACGCTGCGTGCGCACGCGCAGTCGGCGCACAAGAAGTGCTTCGCGATGCGGTGCGCGGACTGCGCCCAGCCAGCCAGGAACTACAAGGCGTTCGTCGCGCACGTCGTCGCGCACCGGCCCCACCTCAAGAGCTACTGCCAGTACTGCAACAGCCACTACGACGACGCCGAAGAGCTGAACCAGCACATAATCAAGCACATCACGAGCCAGCAGCGGCCGTGCAACGGCTGCGGGCAGATATTCAAAGACAACCTGCGCTTGGCCAAGCACAAGATGAACTTCAACAGCACGTCGAAAGACCCCGTGCGGCAGCAGAGAGCCCGCGACGCCGCGAAACGCAGGCGCGTCACAAAGAAAACCGAACCAAGCCTTCCTAAACCCAGAAAACCCAGAACCGTCTACACCACCAGCGACCTGACGTGCACCGTCTGCTTGAAGCTGTTCGAAACCATAACCAAGTTGAAACGCCACGTCAAGACCCATGACAGCAAGCGAAGGAAGAATTTCGTCTGCAAAACCTGTGGCCGGGCGTTCCTGACGAGCCACACGATGAAAGAGCACATGAAGGTGCACCAGACCAAATCGGAGGTGTGCCAAGTGTGCCAGAAGGAGTTCCACACGACCCGGGCTCTGAAGCACCACATCGTGACCCACTCGGAGGAGCGTCCGTTCGTCTGCGATGAATGTGGAAACAGCTTCAAGAGCAAGAGACGGCTGAAATGCCATTTGATCAGCCATTCTGAGGTGAAACGGTTCAAATGCATGTACTGCTACAAGGAGttcaatttcaaaatgaaTTTGAAGACACACGAGTACCAGCACACCGGCCAGAGGCCGTATGCTTGTGAATTGTGTGAAAGAACGTTCACGAACTGGACCAACTGCAATAAGCACATGATAAGGAAGCACGGGGTGACGTTGGCCAAGACGAAGATCACCGCTCAGGGACGGGTGGACATCGACCGGAAGACCGGGGAAGTGCAGAAGTTGGAGTCCGATGAGAAGACTAAAGTGTGGCTCGACGAGATGATGAAGCCGGGTAAGCCCGGAAAGAGAACGGAgagcttttaa
- Protein Sequence
- MEDPLEIAIRTTHCRFCGESKNYTEVLDLAGDLKTLSEYLRIIKFLKIDYLDLSQTNKLPKSTCETCYDQFQEAYKFFQKINEIHSYFKKCKVVNIKTEPICEANSDKGTEDAGANSNDSIMQNEKCDELETDKNSTPANSGCATELCIFCSEQKTSDNLVNPSEKTLAEDLTEMVDYFKMDHLAHKIKLAKTSCEPCYRTLHNAYNFFKNVERNQSLLEDIYCTKSLLHALLVKVEIEPCSSDSKESPNKDTNPLSLCAITIQDDESWTNYTYICCHCRIMVDNMEELRVHSKERHNVCYALRCADCDEQFVGYNEFVEHVRGHRDVLSPLSNFKSGFRLYCQYCNMRFESAAQCVQHVLVVCAPAPAQHVCEQCGEALPHASALEWHRKLYGGAAAQSRAKHTGSWEDYQWICQECGVQTADVETLRAHAQSAHKKCFAMRCADCAQPARNYKAFVAHVVAHRPHLKSYCQYCNSHYDDAEELNQHIIKHITSQQRPCNGCGQIFKDNLRLAKHKMNFNSTSKDPVRQQRARDAAKRRRVTKKTEPSLPKPRKPRTVYTTSDLTCTVCLKLFETITKLKRHVKTHDSKRRKNFVCKTCGRAFLTSHTMKEHMKVHQTKSEVCQVCQKEFHTTRALKHHIVTHSEERPFVCDECGNSFKSKRRLKCHLISHSEVKRFKCMYCYKEFNFKMNLKTHEYQHTGQRPYACELCERTFTNWTNCNKHMIRKHGVTLAKTKITAQGRVDIDRKTGEVQKLESDEKTKVWLDEMMKPGKPGKRTESF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -