Basic Information

Insect: Metalampra italica
Gene Symbol: -
Assembly: GCA_949699065.1
Location: OX452998.1:4503165-4513040[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00016 0.0094 16.7 1.1 1 23 184 206 184 206 0.98

2 10 0.025 1.5 9.8 4.3 1 23 213 235 213 235 0.97

3 10 0.0047 0.27 12.1 0.8 1 23 239 261 239 261 0.96

4 10 0.035 2 9.3 2.4 3 23 268 288 266 289 0.94

5 10 0.011 0.66 10.9 0.2 1 20 319 338 319 340 0.96

6 10 0.24 13 6.7 0.1 3 23 353 374 352 374 0.94

7 10 0.044 2.5 9.0 0.1 2 23 484 505 483 505 0.96

8 10 8.7e-06 0.0005 20.7 5.1 1 23 511 533 511 533 0.98

9 10 0.00018 0.01 16.6 1.2 1 23 539 561 539 561 0.98

10 10 0.0004 0.023 15.4 0.9 1 23 567 590 567 590 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00016	0.0094	16.7	1.1	1	23	184	206	184	206	0.98
2	10	0.025	1.5	9.8	4.3	1	23	213	235	213	235	0.97
3	10	0.0047	0.27	12.1	0.8	1	23	239	261	239	261	0.96
4	10	0.035	2	9.3	2.4	3	23	268	288	266	289	0.94
5	10	0.011	0.66	10.9	0.2	1	20	319	338	319	340	0.96
6	10	0.24	13	6.7	0.1	3	23	353	374	352	374	0.94
7	10	0.044	2.5	9.0	0.1	2	23	484	505	483	505	0.96
8	10	8.7e-06	0.0005	20.7	5.1	1	23	511	533	511	533	0.98
9	10	0.00018	0.01	16.6	1.2	1	23	539	561	539	561	0.98
10	10	0.0004	0.023	15.4	0.9	1	23	567	590	567	590	0.97

Sequence Information

Coding Sequence: ATGAACGACATACCTGTGAACCAAGAAACCAAAATAGAATTAAAAGAAGAAGGGAGCCGAGAAGATTATATGCAGGACTGTAAATCACCGGTAGAAATACTTATAGATTTAAACATTACTGACACTATAAACCCAATCAAATCTAATGCAGAAGCATATGATCCTCATATAACATGGTTGTTTGATGATGTGCTTGAGATTAAAGAAAGCAGTTGCAAAGATGAATGCGTTAAGTTTGAGTCTGATACAGAAAGTAATACTGTCGataattcatttaataaaagtGTTGTCTCTGAAAATAGAAACACAGTCACAGACAATacgaaattaaacaaaaatatgttcTCTAATCGTAAAAAACCAAAAAGTAAAACGAAACTCAAGTCAGCGGATTTAAATAGACAGGGAGTTGGAAGATTCAAAACCAAGGAAGAGCTAGATGAGTTTGGGAAGACATATAATTTTGATGTAATTATAATGACAAAGCACGAGCAAATCTTAGATCTGGAACAGTCGAGGAAGAAATGTTTGTCGTATCAGCAGGGGAGATATAAATGTGAGGAGTGTTTCAGAGGATTCGCATCGGaaactacttataaaaatcaTATGACTGTGCACGACCCAGCCAGCGGCAGCCACGTGTGCGAGGTGTGCAAGCACCGGTACCCCACGGCACGCAAGCTGAAGAGTCACAGCCGGCAGCACAGGTTAAAGTTCATCTGCAAGGAATGCCAGCAGAGATTCAAAGACAGCACTCCAGCGAGGGAGCATTACCGAGGCCACACGGGCGCCAGCTACGGGTGCCAGTTCTGTGGCGCCACGTTCAGTAAGTACGCTTCCCGCTTCAACCACATCCGGTTCCACCACGGCGAGACCACCTGCGACATCTGCTACGAGGGGCTAAATGGTGCCAGCGGAATATTGCAGCACAAGGCAGTAGCGCACAAAAAGACGTACCAGTGCGCGTCGTGTGACGTGCACTTCGACAACGCGCACGCCATGACAAGGCACATAGGCTCGTCCCCCGACGGCGCTTGCGATCCCAACATAAGGGCGTGCGCCAAGTGCGGCGAGCCGTGCGCCTCCGCCGAGCAGTTCGACGAGCacgtggcgcgcgcgcacccgcAACGACGGCCCGGACTAAACAGGACAGATGAGAGTTGCAACGGAAAGGAAAAGAAAAGGATGGCACGCAAATGCTGTTGTTGTCCACATTTGGACCTTGACAAAAAAGATGGGGACGGGGAAAGCGTTGGACCCAATAGTGGGTCGTGCCCCTGCGGTGACGGGGAGGACGAGTGCCTCTGCCCGCTGGGCTCGGTTCGCAGCTGCAAGGTGGAGCTGGCGGACCGGAGCCCTATATACGTGGGCGGGGTGCTCCGCAAGCACAGGTGGGCCCACACGGGGTGCTGCCATGTTCGGAGGCTGAATAAAAGAACAGGGGCAATAATGTGCGAAATGTGCGCGACTACAGTTcagTCGAGTACTGCATTGAGGGCACACCAGCTCGTCCACACCGGGGAGAAGCCGTTCGAGTGCAGCGAGTGTCACAAACGATTCCGGATGAAAACGTCCCTCCGGACGCACATGAACTCCCACACCGGAGAGCGGCCCTTCAAGTGCTCGCTCTGCCCCAAGGCGTTCACCAGTCTGATGAACAAATACAGACACCAGCTGGTGCACACGCAGGCGCGTCCGCACAGCTGCGAGGTGTGCGCCAAAACGTTCAAAACAACTGCAGAAGTCAAGCTGCACGTGCGGACCGTGCACATGAAGATACCGCAgccgcggcgcgtgcgcaacCGGAAGCGGAAGATTGAGTGTACCGACAGTGATTGA
Protein Sequence: MNDIPVNQETKIELKEEGSREDYMQDCKSPVEILIDLNITDTINPIKSNAEAYDPHITWLFDDVLEIKESSCKDECVKFESDTESNTVDNSFNKSVVSENRNTVTDNTKLNKNMFSNRKKPKSKTKLKSADLNRQGVGRFKTKEELDEFGKTYNFDVIIMTKHEQILDLEQSRKKCLSYQQGRYKCEECFRGFASETTYKNHMTVHDPASGSHVCEVCKHRYPTARKLKSHSRQHRLKFICKECQQRFKDSTPAREHYRGHTGASYGCQFCGATFSKYASRFNHIRFHHGETTCDICYEGLNGASGILQHKAVAHKKTYQCASCDVHFDNAHAMTRHIGSSPDGACDPNIRACAKCGEPCASAEQFDEHVARAHPQRRPGLNRTDESCNGKEKKRMARKCCCCPHLDLDKKDGDGESVGPNSGSCPCGDGEDECLCPLGSVRSCKVELADRSPIYVGGVLRKHRWAHTGCCHVRRLNKRTGAIMCEMCATTVQSSTALRAHQLVHTGEKPFECSECHKRFRMKTSLRTHMNSHTGERPFKCSLCPKAFTSLMNKYRHQLVHTQARPHSCEVCAKTFKTTAEVKLHVRTVHMKIPQPRRVRNRKRKIECTDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -