Mita019393.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:739168-751021[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1 59 4.7 1.3 1 23 228 251 228 251 0.94 2 11 0.0032 0.19 12.6 0.2 1 23 258 280 258 280 0.98 3 11 0.95 54 4.8 0.6 1 20 284 303 284 307 0.85 4 11 0.57 33 5.5 1.9 1 23 314 336 314 336 0.87 5 11 1.2e-05 0.0007 20.2 1.8 2 23 341 363 340 363 0.97 6 11 0.00036 0.021 15.6 1.2 1 23 369 391 369 392 0.95 7 11 0.00019 0.011 16.5 0.7 2 21 403 422 403 427 0.93 8 11 7.9e-05 0.0045 17.7 1.4 1 23 435 458 435 458 0.94 9 11 0.00023 0.013 16.2 0.8 1 23 463 486 463 486 0.97 10 11 8.3e-07 4.8e-05 23.9 3.3 2 23 494 515 493 515 0.97 11 11 5.2e-06 0.0003 21.4 1.4 1 23 521 544 521 544 0.93
Sequence Information
- Coding Sequence
- atggatACTAAAGTGGAATTGTGCGACAAATTGCTGTGCATGGCTTGTCTGTGCGTCGGCCAGGAGCTACTCAAGGTCACGGAGCCGGCCCTGTATCAGTTTTATACAGATACATTGAATGAAATTAAGGTGATAGTTCCGAACCTTAACCTCAGCATGTGCTGGGAGTGCACCAACGTTCTCCGGAGGACCGTGGCCTTCAAAGAGCAGTTGAAGGACTCCTACAAAACCCTGCTCACTTACCCAGATGAGAACCTTATAGAACGCTTGACTGATGTGAAAGAAACCAACCCAATTGAGTTGGACGATTTGAAGAGTGAAAACGGGAAGACGGAGTCCAACATTGCACTGTTCTTTGTCAAGGAGGAGATGAAAGAGGAATGGCAGCCCAATGTGGAAGTGCCACTTGAGGAGTACAAGCCTGGTCAACCGCTGCTGGAGGAGCTCAAGCTGTCAGACGGTGGTGTCATGTCGGACCCGGGCTCCGGGCCGGAGTATGACACGGACTCGCTCCTCGCTCAAGTGAAGGCCACCAAGAAAAGGAAGAAAAGAGCTAAGGAGGTTAAAAAAAGAAGGAAACACAGCAAAGACCAGAGGATCATCAATGTAGAGTTAACATTTGAGGAGATGCTGGCGGAGAGGGAGGTCGAGAAGACGAAAGCGTCGTATTTGAAGTCGCCTTACAAATGTGAGAGCTGTATCCTGGGATTCAACTACAAGCAAAGCTACAAATCCCATGTCCAGGCCAAACATGTTCCGTCGTTGGGTGAGTACAGCTGTCCAGTTTGCGACACCATAGTGGTCTCGGTGGAGTCCTTCACTTCACATTACAAGAGGCACATGAAAAGGTATGACTGCAGCATCTGCCGCAAGCGCACGGCCGACCTGAAGGTGATGCAGCAGCACTTCTACGCCACACACGAGATTACCCTCAAGCAGTACACCTGCGACGTCTGCGGGAAGATATCCAACTCCGTGGACACGCACCGGTACCACAAGAGCACACACAAGGCGCGCGTCAAGTGTCAGCAGTGCGACAAGACGTTCAGCCACCGCGCGGGACTCATGAACCACCGCCTCACGGTGCACGAGAACCGCAACAAGTTCGTGTGCCCCGCGTGCGGGAAGCAGTTCCGGTGGAAGGCGAGCCTCAAGCGGCACCAGGACCAGCACCACAAGGGGGAGCAGCAGACGGCTGCCGAGGCGTACTGCTCCGAGTGCGACATCACCTTCGCCTCCATCTCCTCGTTCCAGCGACACATGAAGAACAGCCTCAAGCACGTGTCCCAGCTAGACCTCAGGTTCATATGCGACCACTGCAAGCGGCGGTTCGCCGACAAGACGAAGCTGCGCGACCACATCGAGGAGATACACCTCCACAGGACGTACCAGTGCCACATATGCAACAAGCCGTCCAAGAACCGCGTGGGTCTGGACCAGCACGTGCGGAACGTGCACCGCGGCCGGCCCAACAACAAGATGTGCCACCACTGCGGGAAGGGCTTCCCAACGAAGGTGCAGCTGGAGTCGCACATCCGCACGCACACGGGCGAGCGGCCGTTCATCTGCGAGTACTGCCCCACCACCTTCTCGCAGCAGTCCAACCTCTACAAGCACAACaaacagGTTCACCTAAACATAAAACCGAAGCGCAGCCCGGGGAAGAAGACGAAAGAGGAAACTGCAACCGAGATGCCCAGGATCGAGATCTCGGTACCCTGCCACGTGGCACCAGACCCTCTCACCGAGCAGACACCCGTCGCTGTCATACACTTCACCCCGGAAGGTGGTTTCGTCATGCAATAG
- Protein Sequence
- MDTKVELCDKLLCMACLCVGQELLKVTEPALYQFYTDTLNEIKVIVPNLNLSMCWECTNVLRRTVAFKEQLKDSYKTLLTYPDENLIERLTDVKETNPIELDDLKSENGKTESNIALFFVKEEMKEEWQPNVEVPLEEYKPGQPLLEELKLSDGGVMSDPGSGPEYDTDSLLAQVKATKKRKKRAKEVKKRRKHSKDQRIINVELTFEEMLAEREVEKTKASYLKSPYKCESCILGFNYKQSYKSHVQAKHVPSLGEYSCPVCDTIVVSVESFTSHYKRHMKRYDCSICRKRTADLKVMQQHFYATHEITLKQYTCDVCGKISNSVDTHRYHKSTHKARVKCQQCDKTFSHRAGLMNHRLTVHENRNKFVCPACGKQFRWKASLKRHQDQHHKGEQQTAAEAYCSECDITFASISSFQRHMKNSLKHVSQLDLRFICDHCKRRFADKTKLRDHIEEIHLHRTYQCHICNKPSKNRVGLDQHVRNVHRGRPNNKMCHHCGKGFPTKVQLESHIRTHTGERPFICEYCPTTFSQQSNLYKHNKQVHLNIKPKRSPGKKTKEETATEMPRIEISVPCHVAPDPLTEQTPVAVIHFTPEGGFVMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -