Mita019715.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452998.1:4835863-4844937[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.7e-05 0.0033 18.1 1.7 1 23 242 264 242 264 0.99 2 11 0.4 23 6.0 0.3 1 23 271 294 271 294 0.89 3 11 0.0064 0.37 11.7 0.9 1 23 325 348 325 348 0.93 4 11 0.019 1.1 10.2 0.1 3 23 354 375 353 375 0.97 5 11 0.024 1.4 9.9 0.0 2 20 389 407 388 409 0.93 6 11 0.058 3.3 8.7 0.1 3 23 425 445 425 445 0.98 7 11 0.0011 0.066 14.0 3.5 2 23 453 475 452 475 0.96 8 11 0.00011 0.0063 17.2 1.6 2 23 497 518 497 518 0.97 9 11 6.5e-05 0.0037 17.9 1.0 1 23 524 546 524 546 0.99 10 11 2.4e-05 0.0014 19.3 0.3 1 23 552 574 552 574 0.94 11 11 2.8e-06 0.00016 22.2 1.6 1 23 580 603 580 603 0.97
Sequence Information
- Coding Sequence
- ATGAATGAGGTGTTAGCTTGTCGCGCGTGCCTCGCCACAGACGTGAAACTGTACAATATGTACAAATATAACTTGGTAACCGCGTATGAAATGCTGACTGCTACACagATATCCTCATCGGACGGTCTTCCTCTGCAGCTGTGCAGTTTCTGCAGTGCGCTGCTACTCAAATGCGCCAGCTTCCAGGAGAGATGTCGCAACGTTCAGCAGCTTTTGAACTACGCTGTATTGGAAGAGAATTCGttaaCCACAGATTATATCTGCAACATAGACCGTGAAACACACAACCTCACTTTACCCTACAGCGTTGAGCACCAACTCAAACAAGAGAACTTTACAAAAGAGGAAAACAATATATCCGACAATAATTTTGAAGACGACGATGAAGAATGCataaaatttgaagaaaacataaaatttgaaGAACACTGCTCGACCAGCGATGAAGAACCGCTGTCAAAGAAGATAGTTAGAACACCGCACAAGAAAAAgcgaagaaaaaaacacaaagGTGAAGAAAAATTCACTGATGATATCAAAGTTAAAAACGAAATTGTGGACACCGAGGAGTTTGATGATCATTTTGATACTTTTGATGATGAGAAACAGAATTTGGAGTACTTTGAGACCAATGATGATGTGGATGTGATAATTTTGAGCAAACAACAACAGATAGAGGAAATACAATCAAGAAGGAAATCACTCAACTATATAAATTCTCTTTACAAATGTGACAAATGCTATAAAGGGTTTATAACCGAGGCTACCTTCAACAATCATATGTCCAGACATGATCTGGCGTCGGGCGCGCACGCGTGCGAGGTGTGCCACACGCGCTGGCGGAGCGCGCGGGCGCTgcgcgcgcacgcgctcgCCGCGCACGAGCGACAGTACGCGTGCCGCCGCTGCGACCACGTCGCCAAGTCCAGCCACAGAGCGAAGGAGCACTGCAAGTGGCACGAGGGCTTCGTGTATGTTTGTGACATCTGTGGAGCCACGTTTAGCAAGTCTACGAGCCACCTGACGCACGTGCGGCTGCAGCACCCGTCGGGGCCGGCGTGCGAGCTGTGCGGGGACTCCTTCATCGGACAGTACGGGCTCAACATGCACAGGAAAAAGGCGCACAGGGACACCGCAGAGAGCGAAGCGGTGCAGTGCGAGAGCCGATGCTCGTCGTGCGGCGAGCAGTTCCGGAGCGCGGGCGCGCTGGAcgcgcaccgcgccgccgccgccggggacGGGGGGGGCGCCTGCGACCCACGGCTCAAGTGGTGCTCCGTGTGCGGCCAGGGCTGCGGCGACGACGGAGCCCTGCAGGAGCACCTCCGCGGGCACGCGCGCCGCGAGCACGCCGTCAAGTGCACGCACTGCAACCGCAAGTTCGCCAACTCCCGCACGTACGCGGTGCACTACCAGCGCTTCCACCTGGGCGGGGGCGGAGCGCGCCCGCGGGGGCGGAGCGCCTGCCGCAGCCCCGCCGACAGCGCTGTCTGCGAGATATGCGGCAAGAAGTGCATGTCAAAAGCGACCCTGGTGTACCACCAGCGGACGCACACGGGCGAGAAGCCGTACCAGTGCCAGGAGTGCCCCAAGCGGTTCAGCATCTACCAGAGACTGCAGATCCACGTGCGCACGCACACCGGCGAGCGGCCGTTCAAGTGCGCGCTCTGCCCCAAGGCGTTCAAACAGAAGGCCGCGCTCAACAGGCACGACCGGGTGCACAGTGGGGCGAAGCCCTACGCGTGCGCGCACTGCGGGAAGACGTTCTCGCAGTCCAACTCCATGAAGATGCACGTGCGCACCGTACATCTCAAGATGCCCGCCCCGTACAGGACCAACAGGAAGAACAAAGTGGATTGA
- Protein Sequence
- MNEVLACRACLATDVKLYNMYKYNLVTAYEMLTATQISSSDGLPLQLCSFCSALLLKCASFQERCRNVQQLLNYAVLEENSLTTDYICNIDRETHNLTLPYSVEHQLKQENFTKEENNISDNNFEDDDEECIKFEENIKFEEHCSTSDEEPLSKKIVRTPHKKKRRKKHKGEEKFTDDIKVKNEIVDTEEFDDHFDTFDDEKQNLEYFETNDDVDVIILSKQQQIEEIQSRRKSLNYINSLYKCDKCYKGFITEATFNNHMSRHDLASGAHACEVCHTRWRSARALRAHALAAHERQYACRRCDHVAKSSHRAKEHCKWHEGFVYVCDICGATFSKSTSHLTHVRLQHPSGPACELCGDSFIGQYGLNMHRKKAHRDTAESEAVQCESRCSSCGEQFRSAGALDAHRAAAAGDGGGACDPRLKWCSVCGQGCGDDGALQEHLRGHARREHAVKCTHCNRKFANSRTYAVHYQRFHLGGGGARPRGRSACRSPADSAVCEICGKKCMSKATLVYHQRTHTGEKPYQCQECPKRFSIYQRLQIHVRTHTGERPFKCALCPKAFKQKAALNRHDRVHSGAKPYACAHCGKTFSQSNSMKMHVRTVHLKMPAPYRTNRKNKVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -