Mita018716.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452996.1:5404660-5414131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.1 6 7.8 1.1 1 23 63 85 63 85 0.97 2 21 0.0073 0.42 11.5 0.1 3 22 121 140 120 140 0.94 3 21 6.3 3.6e+02 2.2 0.3 2 23 184 206 183 206 0.83 4 21 0.68 39 5.3 0.1 2 23 213 234 212 234 0.94 5 21 0.36 20 6.2 0.7 1 23 240 262 240 262 0.95 6 21 0.004 0.23 12.3 0.1 2 21 269 288 268 289 0.94 7 21 0.032 1.8 9.5 0.9 2 23 305 326 304 326 0.97 8 21 0.00071 0.041 14.7 1.3 1 23 334 356 334 356 0.96 9 21 2.5 1.4e+02 3.5 0.4 2 16 434 448 433 450 0.87 10 21 0.04 2.3 9.2 0.4 1 23 646 668 646 668 0.97 11 21 0.0085 0.48 11.3 0.1 3 22 704 723 703 723 0.94 12 21 6.3 3.6e+02 2.2 0.3 2 23 767 789 766 789 0.83 13 21 0.68 39 5.3 0.1 2 23 796 817 795 817 0.94 14 21 0.36 20 6.2 0.7 1 23 823 845 823 845 0.95 15 21 0.004 0.23 12.3 0.1 2 21 852 871 851 872 0.94 16 21 0.0041 0.24 12.3 1.5 2 23 888 909 887 909 0.97 17 21 0.0064 0.37 11.7 0.8 1 23 917 939 917 939 0.96 18 21 0.006 0.34 11.8 0.4 2 23 946 967 946 967 0.97 19 21 6e-06 0.00034 21.2 0.6 1 23 973 995 973 995 0.96 20 21 0.00016 0.0094 16.7 2.5 1 23 1001 1023 1001 1023 0.98 21 21 0.00022 0.013 16.3 5.7 1 23 1029 1052 1029 1052 0.97
Sequence Information
- Coding Sequence
- ATGGCAGACTTCTCACCAACATACTGTGGCCTATCAGTCTTACAAAGTGATGTACAAGAAGACGCTAAAGAGTCTGATGAGTCCTGGACAAGTTACCAGTGGATTTGCCGACACTGCAACATAGAGCTAGATAGTATGGAAGAGATCAGAGAACACAGTAAGGGATTCCATGGTATTTGCTACGGGTTCAACTGTGTGGACTGCAAAGAGCAGTACAATACTTTCAATTCGTTTGTTGAGCATGTGCGGCAGCATAGAGATGATTTGAGATACTACTGTCAATACTGCAACCTGAAGCTGGAGGGTCGGTCGGCGTGCGCGCAGCACGAGCTGTCGCACTGGGCGGGCGCGCACCGCATCTGCGACCTGTGCGGGGAGGTGTGCGCCGACGCGGACACGCTGCTCCGCCACAAGAAGACCTACAAACAAGCTGGTCTGCCGCGCAGGGACTATAGGAAGAGACCAAAGCAGGTGGCTCCAGCATTCACATACAATGGTATACCGGTGTTCGAGACCACTCAGGCCAGGAGCTGGGAGGAGTATGAGTGGACTTGTTTGGAGTGCTGCGTGCGCGCACCGGACGCGGACAGCCTGAGGCGGCACGCGCGCGAGTTCCACAACAAATGCTTCGCGATGAAATGCGTGGACTGCCTCAAGGTCGTCCGCAACTACCGCCTGTTCGTGGCGCACGTTACGGGGCACCGCCCCCACCTCAAACACTACTGCCAATATTGCAACAGATACATCGATAACTTATCAGACATGGCCGAACACGTCAACGAACACATGACCGGTCCCCACAAGCCTTGCGACGGCTGCGGACAAATATTCGATAACAACACGTTACTACTACAACATCTCAAGCAATACGACCCGCCCCGGCGAAAAGGGACTCTGACAACTGAAGACCTCACTTGTGATATATGCTTGAAGCTGTTTAAAAATATGGTTCGTTTGCGCACGCACAGGATAACCCATGACAAAAACAGACAACGTGACCACATTTGCGACAGTTGTGGCAAAGCGTACTACAACGCGCATGATCTATCCGTTCACGTAAAAAGCCACAACGAAGCCAACAAAACAGAGTCAAAGACCGACTCCTTAATGCAGCACCTTCTAAAAGGCGAGAActcgaaaacaaaaccaaGTCACTGTCGGTTTTGCGCACAACAGAGCAAATATGAAGACCTACTGGATTTATCAGACGACGGCGAGGTATTACAGAAGTATCAAAATATGATATCCGCTCTTAATATcgattatttagattttaacGACTCAAAACTACCTAGAACAACATGTGAAATGTGCTACAAAGCATTTCAAACAGCTTACACCTTCTTTGACCAAGTAAAGCGATCACAAGTTGAATTGACTAggttatattatgtaaacatAAAGGACGAACCAACCGAACCAtcgattgaaattaaaattgaaccAATAGATGATTCACAAGCTGTTGATAATTCGAATAAAACTAAGGAAATCCCCAAAGCAGCCCAAGTTCTGATACATGCAAAAAAATCGACACCAAAACGCAAAGCCTCTAAACTTCAGCAATCAACTCCACCAAAAAGGACTAGGAAGTCAGTTCCTGTACAAAAAACCCGAAAACCCGTTACAAGACAATCTAAAAATGTTGAAGTTTCACCCGATAGCAGCCCAGTATCAAGTGACAATGAGCACGAAATTGAATCCGATACCTCATCTTCATCGGAATCTGACATGGACTCAATAAAAACAATGGCAGACTTCTCACCAACATACTGTGGCGTATCAGTATTTCAAAGTGATGTACAAGAAGACGCTAAAGAGTCTGATGAGTCCTGGACAAGTTACCAGTGGGCTTGCCGACACTGCAACATAGAGCTAGATAGTATGGAAGAGATCAGAGAACACAGTAAGGGGGTGCATGGCATTTGCTACGGGTTTGACTGTGTGGACTGCGATGAACAGTACAATACATTCAATTCGTTTGTTGAGCACGTGCGGCAGCATAGAGATGATTTGAGATACTACTGTCAATACTGCAACCTCAAGCTGGAGGGTCGGTCGGCGTGCGCGCAGCACGAGCTGTCGCACTGGGCGGGCGCGCACCGCATCTGCGACCTGTGCGGGGAGGTGTGCGCCGACGCGGACGCGCTGCTCCGCCACAAGAAGACCTACAAACAAGCTGGTCTGCCGCGCAGGGACTATAGGAAGAGACCAAAGCAGGTGGCTCCAGCATTCACATACAATGGTATACCGGTGTTCGAGACCACTCAGGCCAGGAGCTGGGAGGAGTATGAGTGGACTTGTTTGGAGTGCTGCGTGCGCGCACCGGACGCGGACAGCCTGAGGCGGCACGCGCGCGAGTTCCACAACAAATGCTTCGCGATGAAATGCGTGGACTGCCTCAAGGTCGTCCGCAACTACCGCCTGTTCGTGGCGCACGTCACGGGGCACCGCCCCCACCTCAAACACTACTGCCAATATTGCAACAGATACATCGATAACTTATCAGACATGGCCGAACACGTCAACGAACACATGACCGGTCCCCACAAGCCTTGCGACGGCTGCGGACAAATATTCGATAACAACACGTTACTACTACAACATCTCAAGCAATACGACCCGCCCCGGCGAAAAGGGACTCTGACAACTGAAGACCTCACTTGTGATATATGCTTGAAGCTGTTTAAAAATATGGGTCGTTTGCGGACTCACAGGAGAACTCACGACAATAACAGACAACGTGACCACATTTGCGACAGTTGTGGCAAAGCGTTCTACAGCGTCCACGTTCTAGCCGCCCATGTCAAAAGCCACAGCGAAGTCAAAACAGAGGTCTGTCAGCTGTGCAAAAAGGAATTTGGGACTATACAGAAGTTGAGAGCACACGTTTTAACGCATTCAGAGCTAAAGCTGTTCACCTGTGATGAATGCGGGAAGAGTTTCAGAACGAAAGAGCGTTTGAGACTTCACGTGTTAGGTCATACGGATGTTAAGAAGTTTAAATGCCTTGTGTGCGAGAAGGAGttcaagtttaaaaataacatgaaGTCTCATATGAATCTTCATACGGGCGACAGACCGTACTCCTGTCAACATTGCGACAGGACATTTACTAACTGGGCCAATTGCAATAAACATATGATTAGAAAACACGGGGTCACATTAGCTAAGACTAAGTTAACGTCTCAAGGAAGGATTGAGATTAACAAAGAGACTGGGAAAGCGAAGAAGTTAGCAAGTGATAAGAAAACTAAAGAATGGATGAGTCAGGTGATGAAGCCTTCTAAACGCGGGAAGAAAACcgcaaaataa
- Protein Sequence
- MADFSPTYCGLSVLQSDVQEDAKESDESWTSYQWICRHCNIELDSMEEIREHSKGFHGICYGFNCVDCKEQYNTFNSFVEHVRQHRDDLRYYCQYCNLKLEGRSACAQHELSHWAGAHRICDLCGEVCADADTLLRHKKTYKQAGLPRRDYRKRPKQVAPAFTYNGIPVFETTQARSWEEYEWTCLECCVRAPDADSLRRHAREFHNKCFAMKCVDCLKVVRNYRLFVAHVTGHRPHLKHYCQYCNRYIDNLSDMAEHVNEHMTGPHKPCDGCGQIFDNNTLLLQHLKQYDPPRRKGTLTTEDLTCDICLKLFKNMVRLRTHRITHDKNRQRDHICDSCGKAYYNAHDLSVHVKSHNEANKTESKTDSLMQHLLKGENSKTKPSHCRFCAQQSKYEDLLDLSDDGEVLQKYQNMISALNIDYLDFNDSKLPRTTCEMCYKAFQTAYTFFDQVKRSQVELTRLYYVNIKDEPTEPSIEIKIEPIDDSQAVDNSNKTKEIPKAAQVLIHAKKSTPKRKASKLQQSTPPKRTRKSVPVQKTRKPVTRQSKNVEVSPDSSPVSSDNEHEIESDTSSSSESDMDSIKTMADFSPTYCGVSVFQSDVQEDAKESDESWTSYQWACRHCNIELDSMEEIREHSKGVHGICYGFDCVDCDEQYNTFNSFVEHVRQHRDDLRYYCQYCNLKLEGRSACAQHELSHWAGAHRICDLCGEVCADADALLRHKKTYKQAGLPRRDYRKRPKQVAPAFTYNGIPVFETTQARSWEEYEWTCLECCVRAPDADSLRRHAREFHNKCFAMKCVDCLKVVRNYRLFVAHVTGHRPHLKHYCQYCNRYIDNLSDMAEHVNEHMTGPHKPCDGCGQIFDNNTLLLQHLKQYDPPRRKGTLTTEDLTCDICLKLFKNMGRLRTHRRTHDNNRQRDHICDSCGKAFYSVHVLAAHVKSHSEVKTEVCQLCKKEFGTIQKLRAHVLTHSELKLFTCDECGKSFRTKERLRLHVLGHTDVKKFKCLVCEKEFKFKNNMKSHMNLHTGDRPYSCQHCDRTFTNWANCNKHMIRKHGVTLAKTKLTSQGRIEINKETGKAKKLASDKKTKEWMSQVMKPSKRGKKTAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -