Mita019122.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452997.1:3310203-3319318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.52 30 5.6 0.2 2 23 31 53 30 53 0.93 2 25 0.00061 0.035 14.9 0.3 2 23 76 97 75 97 0.96 3 25 6.8e-05 0.0039 17.9 0.1 1 23 101 124 101 124 0.97 4 25 0.44 25 5.9 1.4 3 22 132 151 131 151 0.93 5 25 0.26 15 6.6 1.6 1 23 158 181 158 181 0.92 6 25 0.04 2.3 9.2 7.2 1 23 188 211 188 211 0.96 7 25 0.94 54 4.8 0.1 2 17 217 232 216 233 0.87 8 25 0.15 8.5 7.4 0.2 2 23 265 287 264 287 0.96 9 25 0.0052 0.3 12.0 0.4 2 23 312 334 311 334 0.95 10 25 0.015 0.87 10.5 2.4 1 23 356 378 356 378 0.96 11 25 0.06 3.4 8.6 1.4 1 19 382 400 382 404 0.78 12 25 0.89 51 4.9 2.4 1 21 410 430 410 431 0.90 13 25 0.022 1.3 10.0 1.4 3 23 525 546 523 546 0.93 14 25 4.3 2.5e+02 2.8 0.6 2 23 578 602 577 602 0.91 15 25 1.6 92 4.1 0.5 3 23 630 651 630 651 0.93 16 25 0.11 6.4 7.8 0.1 2 23 695 717 694 717 0.93 17 25 0.3 17 6.4 0.0 2 23 745 767 744 767 0.94 18 25 0.048 2.8 8.9 0.4 2 23 790 811 789 811 0.96 19 25 0.00087 0.05 14.4 3.5 2 23 816 838 813 838 0.91 20 25 0.73 42 5.2 0.1 3 20 844 861 843 863 0.92 21 25 0.071 4 8.4 3.1 1 23 870 893 870 893 0.91 22 25 0.0015 0.088 13.6 0.9 1 23 900 923 900 923 0.95 23 25 0.00042 0.024 15.4 0.8 1 23 928 950 928 950 0.96 24 25 5.2e-05 0.003 18.2 4.5 1 19 956 974 956 978 0.94 25 25 3.5e-05 0.002 18.8 4.6 1 23 984 1006 984 1007 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAGCGCCATCAGAGCTACACGGTCAATAAAGCGTTCGCGGGACTACCGAAAGTAGAATTCGTTAAAACAGATCTGTGCAATCTAAAATGCAGACTCTGTTCGCAACAGTTCGAAAATCTGAAGGCCATTGCCGCCCATTTGAAAGATGAACACAACAAAGCTGTTGACTTGAACTCTCAGCTCGGAGTGATGCCGTATCGTCTCGACAAGGACGGCTGGAATTGCGCCGTTTGCTCAAAAACCCTCTCGTCGCTAggaaatttaaacaaacacaCCATAACACACTTTCTGCTTTACGTCTGCGACACATGCGGGAAAAGCTACATATCTGCCACAGGATTAGCGCAGCACGTGAGGTTGAAACACGAGAGCGAATACAAGGCGTTCTGCAAGCGGTGTCAGAAGTCTTTTCCGTCGATGGAAGCTAGGGTTCAACATCACCGGACAGAGAAGAGGTGCATGCCTCACTGTTGCAGTCAGTGCCCGGAACGATTCCCCATATGGGAGTTCAAACAGCGGCATATGATTGAGGCTCACGGCATGACGAAGAAGTCCCACCAATGTCCGAAATGTGATCAGAGCTTTACAGTCCGCAGGACATTTTCCGACCATTTTAAGAAGTGCCACTCTCAGGAATATTTGATTTGCATGCACTGTGGACTGAAATTCGCTACCACGTCGCGACTTAACCACTTGGAAGAGGATTTGGATCCTGTCAAGCAGAATGCACTGATAATACTGAACAACTCGACGGCCTACCCGTTCCATCAAGGTCACAACTCCATACGCTGTCCGTTCTGCTCCATTCGTTACCTCGACCCAGGATTGTTTCGAACACACATGGACACAACCCACGTAGACGACGATAGATCAACAACCCTTAAGCCCTTTGAGCATTATTTGACACGCGTCGACATAACCGACCTCCGTTGTAAATCTTGCACCAAGATTTTCCCGTCCCTGGAAGTTTTATCGAAACATATGAACGAAGAACACGATTTAGGTGTCAACTTGAGCCAAAGCCTCGGGCTAGTGCCGTTTAAGCTCGAAACAGACCGCTTTGAATGCCTCGTGTGCTCTGAGAAATTCATCAGCCTGTTCCATCTGTATAGGCACACCGGCAAGCACTATTGCAACTACATCTGTGAGATTTGTGGCAAGAAATTTGAAACCGCCTGCGGGCATAGAGTTCACGTCGATGGTCACGActcgaaaacaaaacattcttGCAAACGTTGCAAAATGTACTTTACGTCTTCGACCTTGAAGAGGGAACACATCCTCAAAAGCAAGGCTTGTATGCCGCTGAGATACAAGAGGATGCGCATAAAGCAAGACGAAGCCCTGTATGCTGAGAAACAGAATGCCATTGCTATACTAACACATACAACGGCGTACCCGTTCCGTCTGGGTCATGAATTGATTTGCTGCATGTGGTGCTCCGAGCGCTACGACGACCCCGCCTTATTTAGGGAGGATGCGGTGAATGCTGAAGAACAGAATGCTGTCGCCATACTGATGCATACGACTGCGTACCCGTTCCGTCTGGGCTGCGAAAATATATGCTGCGTGTTTTGCTCCAAACAGTACAAAGATTATGACCTATTTAGGGTGCACATGGAGTCTGTCCACGAAAGTGTTGAACTGAAGGATGAACTTGAAATTAATTCGTGCATGTTTAATCCTGTAGGAACTTCGCTTATACGCGTAGACATCACAAATCTGCAATGCAAAAGTTGCAATAACCATGAGAGATTCCCAACTCTAGAGAATGTAGCAAATCATTTAAACGACGAACATGACGTGACGGAGAACAACGCCTTGATTATACTGAGCCACTCTACGGCGTACCCGTTCCGGCAACGTGGCGAGATGATTGGCTGCTATTTCTGCTCCAACCGTTACGATGAACCTAGCATGTTTAGGGCGCACATGGACTACCAACATGAAAATGTTGAGCGGTCAACGCTGCCTTTGCCGAGACAATACAGTACATATCACGAAGAGAGGAACAACgccaaaataattataagataCTCCACGGCGTATCCGTTTAGAGTACCAAGTGAAGAGTTGATTTGTGTGTACTGCCTCGGATCTTTTGACGACCCGACGGCATACAGGACTCACATGCAAGAGGAACATAAAAATTTCTCCGTCAAAACTGCCTTTGCTCACTTTGGGAATACTATCACGGACTTTCTAAAAGTGGACTGTACAGATTTGAAATGCAGAATTTGTTTAGAGGCCTTCGATAGCGTGGGTGATGTGGCCAAACACTTAAAAGAAGCCCACGATAAAAGGTTGAACTTGGAGCTGAGACTTGGAATACAAATATTCAAGTTTGGCCAAGAAAGATGGGTTTGCGCAATGTGCAATGAGAAATCTGCAACACTCAGGACTCTCAGTCGACACACTACAACCCATTATCACACTTGCTCCTGTGACACTTGCGGCAAAACTTACAGCAACCAACTGGGTTTAAACAAACACGTATCTAAGGTTCACAACAACTTAAACATCTGCgctaaatgtaaaatatcatTTCCAGATACAGAGTCTAGACGCAAACATGTTCTGGCGACAGAAAAGTGCTGGCCGTTCTGTTGCAGTTTATGTGGTCGCCGATTCGTCACAACGAAATCTAGACGGGATCATTTAACCGAAGACCACGGTCAACCAACTAAACAGTACTCCTGTCCCGATTGCGGTGAAGTCTACAAGAAATTCGCAACATATCGGTCACATTTTATCAAAACCCATACAGAACGCAATTACGAGTGCCCATATTGTAAACGTAAATACGAAACTAAAAAAGAATACACTGATCATGTGGTAGTTCACACTAAAGAGAGGGCGTTTAAGTGTACTCATTGTTCCAAGACTTTTAGTAGGAAAAAGAATTTGATCCAGCATTCGTGGACACACAGTGAACACAAGCGGTTCGAGTGTACTCTATGTAACAAGAAGTTCAATCAGAGAGTCAGCTGGAAAACTCACATGAAGACTCACCATCCTGAGCTAGTTGACTTCTAA
- Protein Sequence
- MEERHQSYTVNKAFAGLPKVEFVKTDLCNLKCRLCSQQFENLKAIAAHLKDEHNKAVDLNSQLGVMPYRLDKDGWNCAVCSKTLSSLGNLNKHTITHFLLYVCDTCGKSYISATGLAQHVRLKHESEYKAFCKRCQKSFPSMEARVQHHRTEKRCMPHCCSQCPERFPIWEFKQRHMIEAHGMTKKSHQCPKCDQSFTVRRTFSDHFKKCHSQEYLICMHCGLKFATTSRLNHLEEDLDPVKQNALIILNNSTAYPFHQGHNSIRCPFCSIRYLDPGLFRTHMDTTHVDDDRSTTLKPFEHYLTRVDITDLRCKSCTKIFPSLEVLSKHMNEEHDLGVNLSQSLGLVPFKLETDRFECLVCSEKFISLFHLYRHTGKHYCNYICEICGKKFETACGHRVHVDGHDSKTKHSCKRCKMYFTSSTLKREHILKSKACMPLRYKRMRIKQDEALYAEKQNAIAILTHTTAYPFRLGHELICCMWCSERYDDPALFREDAVNAEEQNAVAILMHTTAYPFRLGCENICCVFCSKQYKDYDLFRVHMESVHESVELKDELEINSCMFNPVGTSLIRVDITNLQCKSCNNHERFPTLENVANHLNDEHDVTENNALIILSHSTAYPFRQRGEMIGCYFCSNRYDEPSMFRAHMDYQHENVERSTLPLPRQYSTYHEERNNAKIIIRYSTAYPFRVPSEELICVYCLGSFDDPTAYRTHMQEEHKNFSVKTAFAHFGNTITDFLKVDCTDLKCRICLEAFDSVGDVAKHLKEAHDKRLNLELRLGIQIFKFGQERWVCAMCNEKSATLRTLSRHTTTHYHTCSCDTCGKTYSNQLGLNKHVSKVHNNLNICAKCKISFPDTESRRKHVLATEKCWPFCCSLCGRRFVTTKSRRDHLTEDHGQPTKQYSCPDCGEVYKKFATYRSHFIKTHTERNYECPYCKRKYETKKEYTDHVVVHTKERAFKCTHCSKTFSRKKNLIQHSWTHSEHKRFECTLCNKKFNQRVSWKTHMKTHHPELVDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -