Mita003528.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452972.1:10905344-10913170[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00022 0.013 16.3 2.1 1 23 204 226 204 226 0.99 2 31 0.0057 0.33 11.8 1.8 2 21 255 274 254 275 0.92 3 31 3e-05 0.0017 19.0 0.4 2 23 308 330 307 330 0.96 4 31 9.1 5.2e+02 1.7 0.8 3 13 354 364 353 373 0.83 5 31 0.0028 0.16 12.8 0.6 2 23 384 406 383 406 0.95 6 31 0.026 1.5 9.8 0.6 1 23 424 446 424 446 0.97 7 31 0.00013 0.0075 17.0 3.1 2 23 486 507 485 507 0.97 8 31 0.014 0.79 10.6 3.5 2 23 545 567 545 567 0.97 9 31 7.3e-05 0.0042 17.8 0.7 1 23 617 640 617 640 0.97 10 31 0.0025 0.14 13.0 2.3 1 23 698 720 698 720 0.97 11 31 0.0019 0.11 13.3 3.8 2 23 732 753 731 753 0.97 12 31 0.023 1.3 9.9 1.3 2 23 765 786 764 786 0.96 13 31 0.0059 0.34 11.8 0.7 1 23 796 818 796 818 0.98 14 31 0.022 1.2 10.0 4.6 1 23 846 868 846 868 0.97 15 31 0.071 4 8.4 3.6 1 23 879 901 879 901 0.97 16 31 7.5e-05 0.0043 17.7 0.4 1 23 909 931 909 931 0.98 17 31 0.00035 0.02 15.6 0.3 2 23 951 973 950 973 0.97 18 31 1.5 89 4.2 1.0 1 23 991 1013 991 1013 0.91 19 31 1.5 87 4.2 4.3 1 23 1020 1043 1020 1043 0.91 20 31 0.0099 0.57 11.1 3.1 2 23 1054 1076 1053 1076 0.94 21 31 0.009 0.51 11.2 0.4 1 23 1098 1120 1098 1120 0.97 22 31 10 5.7e+02 1.6 0.4 2 20 1124 1142 1123 1143 0.75 23 31 1.7 97 4.0 3.1 2 23 1163 1185 1162 1185 0.95 24 31 0.0049 0.28 12.0 0.1 2 23 1201 1222 1200 1222 0.95 25 31 4.6 2.6e+02 2.7 3.4 5 23 1232 1250 1229 1250 0.93 26 31 0.031 1.8 9.5 2.2 2 23 1261 1283 1260 1283 0.95 27 31 0.014 0.81 10.6 3.0 2 23 1300 1318 1300 1318 0.96 28 31 0.47 27 5.8 1.3 2 21 1322 1341 1322 1342 0.92 29 31 0.21 12 6.9 0.5 2 23 1391 1412 1390 1412 0.93 30 31 0.016 0.94 10.4 0.6 2 23 1423 1445 1422 1445 0.96 31 31 3.2 1.9e+02 3.2 4.4 2 20 1483 1501 1482 1503 0.94
Sequence Information
- Coding Sequence
- ATGGCCCTCAAGCTCGGAAAATGCAGGCTTTGCTTGAAGCTTGGGGATTTTTATTCCATCTTCACGATGGACAACTCAACGCAGCTGTCCGACATGGTGATGGAATGCGCCAGGATAAAGGTATACGATGGGGATGGACTGCCCGACAAGATTTGCTCGGAGTGTATACAGAAACTGAGCAGCGCGTACATCTTCAAACAACAGTGCGAGAGGTCCGACAACGAGTTACGACGCAACTACATACCGCCGCCAGGTTTCAGCATCTCTCCGCCGCCACCGAACAGACAGAGCAGCGACTCTGCGTTCTCTTCAGCCCACACAGATATCTCCTCCCACCACATCAAACCCTCGAGAGGTGAGAACCTCGAAAGCGTCACTCCAGACAAAAGAACCCGTAAGCGGAGCCGCGAGAGTGTCGACAACGCGTCCACGAGCAGCAGGTCCCACGACTACCCTCCTTCCAGCTCGAAGCGCGTCGAGGAACTGAGGAAAACGCAGAAGAAGCGCCGCACACAGTCACCAGACAATTCCCTGGACTCGGATTACGAAGACACCAGCTTCACGCATTACTCGGCTGAAACCGATTCGGACGAACCACTTCTGCACGACTTCAAATGCAAATACTGTATTAAATCGTTTAAATCTGTCAAGAGTCTAGCGTCGCACATGAAGGTTCATTCCAAAGAGAAGTTAGCTAACAACGCCGTCGTCGATACCCCGAAGAAGAGCGTAGTGGACGCGGCGGATGTGGAAGACAAGCTGAGCTGCGAGAAGTGCTCCAAGACGTTCAAACTGAAGATAATGTTGAAGCGACACCACGAAACGTGCGGGAGGACGCCGAAAACATCGCCTCAGAAAGAATTACTCGTGACCCTTGAGCCGATCGACGCGCAGCTGAGGAAGCCGGCTGACGGCAAGATGGAATGCGAATACTGCACGACCAGATTTAAAACTGTCGAAAATCTCGAGAAGCACTTAAGAGTGGTACACGCAGCTGGGTCgaagaaagacagaaggtCGTTAGAGCGGAAACCTGACAATGCAAAGCTCACTGTCGCCTGCTTGTACTGTGGCATGTCTTTTGAAGATTATTACGTCCACTGCGCCCACTTTAGATCCTGCCAAGACACCGATGACTCCAAGCCCTTGCAGTGTACCATTTGTAATCGAGTTATGTCTAACAAGTCTTCATATTTGACGCATATAAAGAACATACATTTTTGGCCGAAGGAAGGGAGCAAACCTGTCATCGAGAGGCCAAAGCCTGAGTTTGAATGTCGAATGTGCAGCAAGAAAATGGCCTCCCAGGACCTACTGATCAAACACCTATCGCAACATATGTCGGGTGCAGTTGACGACGAAGATGCTGACGAGGAGTCaagAGCGAGTCCCATTGCTGATTCCATGTCTACCCACTCTGAACATAGCAGCATAATCCCAGCATCCGACGGCAACAAGTGTGAGCTATGCGACAAGACATTCAAATACAAGAAATCCTATCAAAAGCATCTCCTCCAACATTCCCAGGTCGAAGTGAAAACCGAACCACCCGATAAAACGTCAACAAGCCTGTTAGACGAGACGTATCGTGAGTCCGAGTCGGATTCCAGTCCAGGGGAAGGGGACGACAACACATGTGATATCTGCGAGAAGCAGTTCTCGTACAGACGCGTTCTGATTCACCATAAAAAGACGAAGCACAACATGAGCTCCGGGACGAAGAGAGCGAAGACCAACTTGAAAGACTGCTCCGTTCGCTGCCTCATCTGTGATGAAGAGATGAAAGTGTCGGCTATAAACGAGCACAACCAAAAGCATATATCGGTCAACATGAAGCCGAGGAATCTGTACACGTGCGCGGAGTGCGGACAGCAGTTCAAGAGCTGCAGCGGACTAGCGAACCACATAAAGCTGGTGCATCGTTTGAAGCAGCCGAACGTGCCGACGCCGGCGCAGTTCGAGGGCGCTGACTTGGCGGATTTTTGTGAGGTCGTTGTGACGAAAGCGGAACCACTGGACCAGGTCCAGAGTCACAACGGCTTTGGGGAGGTTCCGGTAACGAACGCGGGCGCGGTGGTGGACATGGCCGGCTTTACGTGCCACCTCTGCGGCAAGAAGATGAAGACGCTCATCTCGCTGAAGCGGCACGTCAACTGGCACGAGAACGTGGGGAACAATCTCGAGAAGAAGGTCGAGTGCTTCGTTTGTCATGAGACGTTCCGGTTCCAGGTGCACTACCGGCTGCACATGCGCGAGCACTACAACGACACCAACCTGGACCCCAAGCACCTCACGTGCCCCATCTGCAACCGCCGCAGCAAGCACCTGCGCGCCGCCAAGGCACACATGAACTTCCACAAGCAGACCCGCTTCAAGAACAAGGACTACGAGTGCTCCATATGCAAGAGGGTCTTCCAGTACCGCAAGGTGTATCTCTCCCACATGGCCATACATTACAAGCGGGGTGAGGGTCAGAACACTATCGTAGGCGACATCGTTCCCAGTAACCTCGATAAGACAGTGTTCGACGGGACCCACACGTGTCCGCAGTGCGGCAAGGTCTGTGACTCAGAAAACTCTTTAAAATGTCACATTCGGTGGCACACTTCGAAATCTTCCTTATACGGCTCCCGGCACGAGTGTATGGTTTGTCATGTCCAGTTCACGAACAAACGGAGGCTCGAGCTCCACACGAGAGCTCACTTCGAAGACGAGAACGGACCCTACAAATGCACGGTCTGCGGGAAAGGCTACATAGACGAGGAGTACTTCAGGAGACACGTGAAAGGGCACAATTTTGACCATCAATCCCACAAGAAACGTATAGAGAAGCTTCGGAAGAACAAAGTCAAGTGTCCAATTTGCACTCGCTTCTATCCAGATCTGGTGAAACTCATCCGCCATTTGAGGAGGACCCATCCGGAGAGCAAGATGATCAAACAGGACCCTGACGCTCCGCCGCCGCAGTACTTCTCTTGCAAGCTGTGTGCGAAGGTGTTCTTGGACGAACGCCGGCTGCAGCACCACGAGGAAGCCCATCTGAGGAAGCCGGAGTTCTTCAAATGCAAGTTCTGCGGCAAAAACACAGCGTCCCTGAAGAATCATCGGCTGCACGTCAAACAGAAACACATGACCCAGAATTACAGGGATAATCCACTGAAATGCCCTCATTGCGAAGAGAGATTCATCAGGGGGTACCTGCTGCATCACCACGTGCGCGACGTCCACGGCATCGACGAGACGTGGGTGGCGGAGCGCACAGAGAAGACCCTCGAAGGCCCGCTCAAGGAGTTCCAGTGCTCGATCTGCCTCAAACTGCTCGCGAGCAAAGGCAACTTCGAACGACACATCGACTATCACAACACACTGAAGTGCAACTACTGTTTCGACTACTTCAGCTCCCTGAAGTTCCTCGAGGGCCACTTGGCGTTCAGCTGCGAAAAGAAAAAGCTGATCGGCGACACCGAAACGTACCCCAAGAAGGTGAAGTGCGACATTTGCTACAAAGCTTTCCACGTGCAAGTCAAGTTGGACTGTCATCTGCGGACGCAGCACGACATCAGAGTGTCGAGGGAGGCGACGGAGAGCAAGCGGGACATAGTCTGCGATTACTGCTTCAAAGTGTTCGAAAACGAAGACGCGCTGAGCATGCACAAGATCTACCACCGCACGATCGGCTACTACGGCTGTATCTACTGCAATAAAAAGTTCAACACGATAACTGTGTACCGGAAGCATAAAAACCACCACCTCGCCCAACTCAACGTGGACAACCCGACGAAATGCGAGCATTGCGACGAAACGTTCGTCGCGTTCAGAGAGATGATCCACCACCAGCGTGACGTGCACGGCGACGACAAGGAATGGCTGGTGATGCCCAAGGAGTCCATAGAGGAGACATGTAAGATATGTAACAAAACATTCTTCAACCTGCAGAGGCACATGATGTATCACGAGGAGAATAGGTGCAAGAAGTGTGGCGAATACTTCTTCTCCAGAGTGGACTATGACCAGCATTTATGCGCTATAGAGAGTGACGAGGAAGTGGACGAAACCAATAAAAATGACATACGAGTTCAGTACGAGGAATGCACCTTCTGCTTCAAACCGATCACCAGGAAAACGACAAGGAGGCTACACGACAACCTGCACGCCGTGTCGGGGGCGATATCCTGCCGGTTCTGTCCGCTCAAGTTCAAGACGATGGACGCGTTCAACATCCACGCGTTCTCGCACCGAAGCAGGAAGTACAACATCAATCCGATCAAGTGCCGCATTTGCCGCGAGAAGTTCGTCAAATACGGGCCCTTCATGAAGCATATGAAGATCCTCCACAAGTCTAAGAAGAAAGTGCACTACCGCGCGATGATCAAGGCCGAGCGGTGCGTCGTCTGCGGCGACGACTTCCCCAACTTGCACAACCACTACCGCTACCACCTGGAGAACCAGTGCCAGCTGTGCCGCAAGTACTTTACCTCGTACAAAGTGTTGTCCAAGCACCACTGCGACACTCCCGACTCGGATCCCACCAAGGTGTTCACCAGCGATGAAAACTTAAACGCGCTCATGAAATCCTACGTACCTAAAGACGATAAAGACGACGAAAAATTCTACGGTTACACCGACGACGAAGAAGAGGTCGAGCCTCACAGCGTGCCGCAGAATGATGACAGTCAACATTCAGTTGACGACGACAATTTGATCCAGCAACCTTTCGTTATATCGGACGTGCTGTCCCTTTACGAGAAGCGGGAGGAGTTGATGGCAATGTATCAGCAAAAGGTTGACGATTCGAAGGAAGATACGAAGTCTGGTAAAGGCGGCGCGACGGAGAATCAGAACGGTGGCGACAGTGATGTTGACATTGTGAATTTGTCGGACGACGATGATATGGGTATAGAAGTTTCTAGACCTGTAATAGTTATTGAAATCGAAGACTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTMDNSTQLSDMVMECARIKVYDGDGLPDKICSECIQKLSSAYIFKQQCERSDNELRRNYIPPPGFSISPPPPNRQSSDSAFSSAHTDISSHHIKPSRGENLESVTPDKRTRKRSRESVDNASTSSRSHDYPPSSSKRVEELRKTQKKRRTQSPDNSLDSDYEDTSFTHYSAETDSDEPLLHDFKCKYCIKSFKSVKSLASHMKVHSKEKLANNAVVDTPKKSVVDAADVEDKLSCEKCSKTFKLKIMLKRHHETCGRTPKTSPQKELLVTLEPIDAQLRKPADGKMECEYCTTRFKTVENLEKHLRVVHAAGSKKDRRSLERKPDNAKLTVACLYCGMSFEDYYVHCAHFRSCQDTDDSKPLQCTICNRVMSNKSSYLTHIKNIHFWPKEGSKPVIERPKPEFECRMCSKKMASQDLLIKHLSQHMSGAVDDEDADEESRASPIADSMSTHSEHSSIIPASDGNKCELCDKTFKYKKSYQKHLLQHSQVEVKTEPPDKTSTSLLDETYRESESDSSPGEGDDNTCDICEKQFSYRRVLIHHKKTKHNMSSGTKRAKTNLKDCSVRCLICDEEMKVSAINEHNQKHISVNMKPRNLYTCAECGQQFKSCSGLANHIKLVHRLKQPNVPTPAQFEGADLADFCEVVVTKAEPLDQVQSHNGFGEVPVTNAGAVVDMAGFTCHLCGKKMKTLISLKRHVNWHENVGNNLEKKVECFVCHETFRFQVHYRLHMREHYNDTNLDPKHLTCPICNRRSKHLRAAKAHMNFHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHYKRGEGQNTIVGDIVPSNLDKTVFDGTHTCPQCGKVCDSENSLKCHIRWHTSKSSLYGSRHECMVCHVQFTNKRRLELHTRAHFEDENGPYKCTVCGKGYIDEEYFRRHVKGHNFDHQSHKKRIEKLRKNKVKCPICTRFYPDLVKLIRHLRRTHPESKMIKQDPDAPPPQYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKNTASLKNHRLHVKQKHMTQNYRDNPLKCPHCEERFIRGYLLHHHVRDVHGIDETWVAERTEKTLEGPLKEFQCSICLKLLASKGNFERHIDYHNTLKCNYCFDYFSSLKFLEGHLAFSCEKKKLIGDTETYPKKVKCDICYKAFHVQVKLDCHLRTQHDIRVSREATESKRDIVCDYCFKVFENEDALSMHKIYHRTIGYYGCIYCNKKFNTITVYRKHKNHHLAQLNVDNPTKCEHCDETFVAFREMIHHQRDVHGDDKEWLVMPKESIEETCKICNKTFFNLQRHMMYHEENRCKKCGEYFFSRVDYDQHLCAIESDEEVDETNKNDIRVQYEECTFCFKPITRKTTRRLHDNLHAVSGAISCRFCPLKFKTMDAFNIHAFSHRSRKYNINPIKCRICREKFVKYGPFMKHMKILHKSKKKVHYRAMIKAERCVVCGDDFPNLHNHYRYHLENQCQLCRKYFTSYKVLSKHHCDTPDSDPTKVFTSDENLNALMKSYVPKDDKDDEKFYGYTDDEEEVEPHSVPQNDDSQHSVDDDNLIQQPFVISDVLSLYEKREELMAMYQQKVDDSKEDTKSGKGGATENQNGGDSDVDIVNLSDDDDMGIEVSRPVIVIEIED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -