Mita018717.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452996.1:5415914-5423265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.72 41 5.2 0.7 2 21 10 29 9 30 0.93 2 24 0.0014 0.08 13.8 0.5 3 22 33 52 32 52 0.93 3 24 0.0048 0.28 12.0 0.8 2 23 95 117 94 117 0.93 4 24 0.0039 0.22 12.3 2.4 1 23 151 173 151 174 0.96 5 24 0.0078 0.44 11.4 0.0 2 20 178 196 178 198 0.93 6 24 2.3 1.3e+02 3.6 2.6 2 23 221 242 220 242 0.94 7 24 3.6e-05 0.0021 18.7 1.8 1 23 249 271 249 271 0.96 8 24 0.023 1.3 9.9 1.7 3 23 279 299 277 299 0.96 9 24 4.2e-05 0.0024 18.5 2.5 1 23 305 327 305 327 0.99 10 24 0.001 0.057 14.2 1.9 3 23 335 355 333 355 0.97 11 24 1.8 1.1e+02 3.9 5.9 1 23 361 384 361 384 0.97 12 24 0.31 18 6.4 0.2 2 23 465 487 464 487 0.91 13 24 0.55 31 5.6 0.0 2 23 494 515 493 515 0.95 14 24 0.43 25 5.9 0.6 2 20 522 540 521 542 0.92 15 24 0.0011 0.06 14.1 0.3 3 22 545 564 544 564 0.94 16 24 0.00052 0.03 15.1 0.9 2 23 598 620 597 620 0.95 17 24 1.4 81 4.3 0.1 2 23 627 648 626 648 0.96 18 24 0.0043 0.24 12.2 1.1 1 23 654 677 654 677 0.97 19 24 0.029 1.7 9.6 0.0 2 20 681 699 681 701 0.92 20 24 0.00016 0.009 16.7 0.6 1 23 749 771 749 771 0.95 21 24 0.0064 0.37 11.7 1.7 3 23 779 799 777 799 0.95 22 24 4.7e-06 0.00027 21.5 2.9 1 23 805 827 805 827 0.98 23 24 0.0046 0.27 12.1 2.4 1 23 833 855 833 855 0.95 24 24 0.33 19 6.3 6.3 1 23 861 884 861 884 0.98
Sequence Information
- Coding Sequence
- ATGTACCATCTGGTGAGATCCAGACTCTACTGCCCACACTGCAGCATTAAACTGGAAGACACCACACATTATTCTATCCACATGTCCCAGCCGAACTGCTCAGCTTGCGGAGAACTGTTCACAAACAAATCAGCCTTACAACACCACATAAAAAGATACCCACCAGTGTCCAAGAGGAGAAAGAAgcctaaagataaaatatccATTAAAGAACTACTCTCTTACGGAGTCCAAATACTAGATTCGAAAGTAATTATAGAATCATGGTGCGACTATCCATGGATTTGCCAGTACTGCGAGACCAAGGTGTCAGATCAGCACTTGCTGAGGACCCATCTAAAAGATGTTCATAGTAAATGTTTTGGGATGAAATGTGTTGATTGTCAAGACAGTATTTATAGTTTTGAATCGTTTGTTGATCATGTCAGGGAACATAGGTCCAGTTTGAAATTCTACTGTCAATACTGTAACTACAAACTCACCACCCCCGATCAGAACGTCGTCCATATAAACAAACACCATAGCGACCCTCAATGCGACATATGCGGCGAATTCTTCAAAGAAATCTCCGAGTTGGAAATCCACAAAGCCGTATACGACCCACCTAAACGTAAAAAGACACCTCTCAAGAAGCGTGGACCTTTTACAGTCCACGATTTGACTTGTAGCGTGTGTCACAAAGTGGCGAAATGCATCAATAACCTCCGTGCGCACGAGAAATTGCACACAGATCGGCGAAGAGACTTCTTCTGCGATCGCTGCGGCAAATCATTCTTCACAAAAGGTGCTTTAACTGCCCACCACCTTATACACGAGAATCCGGAGCCTCAAATCTGTAAAATTTGCAAGAAATCGTTTTTGACTATAACTCGATTGAAGAAACATGTAAACAGTCATTATGGGGAAAAGCCTTTTCAATGCGCTGAGTGTCAGAGATGTTTTAGGCTTAAAGAGCAGCTTAAAGGGCATATGATCACACATACCGATACATTGCCTTACGGATGTCAGTACTGCGATAAGAGATTCCGTTTCAAAAATGTTCTAAAAAACCACGAATCTACCCACACTGGTGCAAGACCGTACACTTGTGACGTATGCCAAATGGATTTCACGTGCTGGTCCAACTGCGATAAGCATATGAAAAGGAAGCACGGGCTCACAATGGCTAAAACCAAGCTAACTTCGAAAGGCAAGGTGCCCATAACAAAGAATTGTAGATTAAAAAAGATTAAGGACATAGATGGGGAAATTAAGGAGTGGACTGATAAGATCATGGTGCCTCGGAAAAGGGATTTTAGTGCAGAAAATCATTATCAATCCGCATCTATCACTCCAATACCTGAATACGTACACGATATCCAATCTGATGCATACTGGAAAGTATATCCATGGATTTGTGGACAGTGTAATGTTAAATTTGATAATATTAACCTACTCAGAGACCACAGCAAGGAATCCCATGAGATATGTATTAGTTTACGTTGTGCAGATTGCGGTGCTAATGTTAATAACTTTAATGAGTTTGTGGATCATGCCAGATGGCATAGAGAGAGTTTGAGactGTACTGCCCACACTGCAACATGAAACTGGAAGACGCAACACACTACTCCATCCACACATCCCAGCCGAACTGCTCAGCTTGTGGAGAACTGTTCACAAACAAATCAGCTTTTAATCGTCACATAAGAAGATATCAAAAAGCATCCAAGAAGCCAAAGGAACCAAAGAACAAAATGCCTGTGAACGCACTACTGTGTAAAAATATAGAGTCATGGAGCGACTACCCATGGATGTGCCGATACTGCGGTACTAAAGTGTCCGATCAGCACTTGCTGAGGAGCCACCTGAGGGAGGTCCATAGTGCATGCTTTCGTATACAATGTGTTGATTGTCAGGAGAAGACTCAAAGTTTTGGAGCGTTTGTTGATCATGTCAGGGAACATATGTCCAGTTTAAAATTCTACTGTCAATACTGTAACTACAAACTCACCACCCCCGATCAGAACGTCGTCCATATAAACAAATACCACAGCGACCCTCAATGCGACATTTGCGGCGAATTCTTCAAAGAAATCTCCGAGTTGGAAGGCCACAAAGCCGTATACGACCCACCTAAACGTAAAGAGAAGCCTCTCAAGAAGCCTGGACCTTTAGATTTGACCCGTCGCGTGTGTCACAAAGTGGTGACAAGCATCAATAGCCGCCATGCTGACGAGAAATTGCACAAAGATAGACAGAGAAACTTTATCTGCGATCGCTGCGGCAAATCATTCTTTACAAAAGTTGACTTTAATGCCCACAATCTTGTACACGCGAACCTGGAGCCTCAAATCTGTAAAATATGCAAGAAATCGTTTTTGACTAAAGCGCGATTGAAAAAACATGTATACAGTCATTATGGGGATAAGCAGTTTCAATGCAATGAGTGTCAGAAGTGTTTTAGGCTTAAAGGTACTCTTGTAAGGCATATGATCATGCATACGGATCTGTTGCCTTTCGTATGTCAGTACTGCGATAAGAGATTCCGATTCAGAAGTGTTCAAAAAAACCACGAAGTTACCCACACTGGTGCAAGGCCGTACACTTGTGATGTATGCCAAATGGATTTCACGTGCTGGTCCAACTGCAATAAGCACATGAAAAGGAGACACGGGCGCACCATAACAAAGAATTGA
- Protein Sequence
- MYHLVRSRLYCPHCSIKLEDTTHYSIHMSQPNCSACGELFTNKSALQHHIKRYPPVSKRRKKPKDKISIKELLSYGVQILDSKVIIESWCDYPWICQYCETKVSDQHLLRTHLKDVHSKCFGMKCVDCQDSIYSFESFVDHVREHRSSLKFYCQYCNYKLTTPDQNVVHINKHHSDPQCDICGEFFKEISELEIHKAVYDPPKRKKTPLKKRGPFTVHDLTCSVCHKVAKCINNLRAHEKLHTDRRRDFFCDRCGKSFFTKGALTAHHLIHENPEPQICKICKKSFLTITRLKKHVNSHYGEKPFQCAECQRCFRLKEQLKGHMITHTDTLPYGCQYCDKRFRFKNVLKNHESTHTGARPYTCDVCQMDFTCWSNCDKHMKRKHGLTMAKTKLTSKGKVPITKNCRLKKIKDIDGEIKEWTDKIMVPRKRDFSAENHYQSASITPIPEYVHDIQSDAYWKVYPWICGQCNVKFDNINLLRDHSKESHEICISLRCADCGANVNNFNEFVDHARWHRESLRLYCPHCNMKLEDATHYSIHTSQPNCSACGELFTNKSAFNRHIRRYQKASKKPKEPKNKMPVNALLCKNIESWSDYPWMCRYCGTKVSDQHLLRSHLREVHSACFRIQCVDCQEKTQSFGAFVDHVREHMSSLKFYCQYCNYKLTTPDQNVVHINKYHSDPQCDICGEFFKEISELEGHKAVYDPPKRKEKPLKKPGPLDLTRRVCHKVVTSINSRHADEKLHKDRQRNFICDRCGKSFFTKVDFNAHNLVHANLEPQICKICKKSFLTKARLKKHVYSHYGDKQFQCNECQKCFRLKGTLVRHMIMHTDLLPFVCQYCDKRFRFRSVQKNHEVTHTGARPYTCDVCQMDFTCWSNCNKHMKRRHGRTITKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -