Mita019099.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- Zbtb41
- Assembly
- GCA_949699065.1
- Location
- OX452997.1:3174630-3189213[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0015 0.089 13.6 2.4 2 23 45 67 45 67 0.96 2 20 0.00036 0.021 15.6 1.0 1 23 73 95 73 95 0.97 3 20 3.4e-06 0.00019 22.0 1.9 1 23 101 123 101 123 0.98 4 20 1.5e-05 0.00089 19.9 2.2 1 23 147 170 147 170 0.96 5 20 0.015 0.88 10.5 2.4 3 23 207 227 206 228 0.92 6 20 0.0029 0.17 12.7 5.3 1 23 234 256 234 256 0.98 7 20 0.0056 0.32 11.8 0.7 1 13 262 274 262 275 0.91 8 20 2.6e-05 0.0015 19.2 0.8 1 23 290 313 290 313 0.95 9 20 0.0017 0.097 13.5 1.5 2 23 349 370 349 370 0.97 10 20 6e-05 0.0035 18.0 2.2 1 23 398 421 398 421 0.95 11 20 0.0068 0.39 11.6 1.8 2 23 457 479 457 479 0.96 12 20 0.001 0.058 14.2 3.2 1 23 485 507 485 507 0.98 13 20 0.00099 0.057 14.2 0.5 1 20 513 532 513 533 0.95 14 20 4.5e-05 0.0026 18.4 3.2 1 23 550 573 550 573 0.96 15 20 0.036 2.1 9.3 3.4 2 23 609 631 609 631 0.94 16 20 0.00017 0.0095 16.7 0.8 1 23 637 661 637 661 0.92 17 20 1.8e-05 0.001 19.7 0.4 3 23 678 699 677 699 0.97 18 20 0.0094 0.54 11.1 1.9 1 23 705 727 705 727 0.94 19 20 0.00011 0.0062 17.2 1.7 1 23 733 755 733 755 0.98 20 20 0.00035 0.02 15.6 1.0 2 23 762 784 761 784 0.96
Sequence Information
- Coding Sequence
- ATGTACTTCAAACAGCACCACAAAAACGTGCATCTGAAGTTGAAGTTAGGAGCCTGTTACATATGCGGTGTCAAGATCCCAGCACATTTGAGAGCTGCCCACTTGGAGAAGAGCCATGGCATCCCGGCACCCACATGTGGGATTTGCAACAagaaattttcatttccaaACCAAGTGCTACGCCATCATAAAAGCGAGCACATGGGGGAGAGGAACTACGAATGTGTCACATGCAACATGAGGTTCCCGACAAAGGACAGATTGAAACGCCACGAGATAAAACACTCCCCAATAGAGACATTTGTTTGCAATTACTGCGGGAAATCTTTTAAATGGAAGAAGAATCTGTTTACGCACATAAAGATACATTTAAACGATAGGAGGAGTACAACAATACTACCGTATACCCTCACGAAAGCCGACGATGGGACCGACGATTTTGAATGTGACATATGCGGTCGGGTGTTCAAGAAACGGCATAACTTCGCTCAGCATTACAATCAGGTGcatctaaataaaaaacccaAACTGAGAGCCTGCCATCGCTGCGATGTGAAAGTGCCTGGGTATTTGCGCGCCGCGCACATGGAGGCCGCGCACGGCGTGCCAGCGCCGGAGTGCCTCGCCTGCAACAGAAAGTTCGCCTACCCACACCAAGTGATTAAACACCAGAAGATCCACCATATGGGGGAAAAGGATTTTGAATGCAACATCTGTCACATGAAATTCTCGCTGCGTTACAGGCTGTTACACCACATGATAAAGCATACGCAAACTAGGAAATACATATGCGACCATTGTGGAAAATCGTTCAGGAGCCCGACAATACCGTATACCCTCACAAAAGCCGACGATGGGACCGACAATTTTGCATGTGATATATGCGGTCGGGTGTTCAAGAAACGGCGTAACTTCGCTCAGCATTACAATCAGGTGCATCTAAAAAAAAGACCCAAACCGAGGACCTGCCATCGCTGCGATGTGAAAGTGCCTGGGTACTTGCGCGCCGCGCACATGGAGGCCGTTCACGGCGTGCCAGCGCCGGAGTGCCTCACCTGCAATAGAAAGTTCGCCTACCCACACCAAGTGATTAAACACCAGAAAATCCATCTTAAGGGGGAAAAGGATTTTGAATgcAAGAGCCCGACAATACCGTATACCCTTATAAAAGCCGACGATGGGaccgacagttttgcatgtgATATATGCGGTCGGGTGTTCAAGAAACGCAAAAACTTCGCTCAGCATTACCAGCACGTGCACCTAAAGAAAAGACCCAAACGGAGGGCCTGCCATCGCTGCGATGTGAAAGTGCCTACGTACTTGCGCGCCGCGCACATGGAGGCCGTGCACGGCGTGCCAGCGCCGAAGTGCCTCGCCTGCAACAGAAAGTTCGCCTACCCACACCAAGTGATTAAACACCAGAAAACCGACCATATGGGGGAAAAGAATTTTGAATGCAAGATCTGTCACATGAAATTCTCGTTTCTTGGCAGGCTGTCACGCCACATGGTAAAGCATACGCAAACAAGAAAATTCATATGCGACCTTTGTGAAAAATCGTTTAGGTGGAAGAACAATTTGAGGAATCATATGAGCCCGACAATACCGTGTACCCTTACAAAAGCCGACGATGGGACCGACAATTTTGCATGTGATATATGCGGTCGGGTGTTCAAGAAACGCAAAAACTTCTCTCAGCATTACCGGCACGTGCATCTAAAGAAAAGACCCAAACTGAGAGCGTGCCATCTCTGCGATGTGAAAGTGTCTACGTACTTGCGCGCCGCGCACATGGAGGCCGCGCACGGCGTGCCAGCGCCGACGTGCCTCGCCTGCAACAGAAAGTTCCCCTTCCCACACCATGTGATTAAACACCAGAAAACCGACCATATGGGGGAAAAGAATTTTGAATGCAACATCTGTCACATGAAATTCTCGATTCTTGCCTCGCTGTCACGCCACATGAAAGTGGCGTCCCATATGAAAGCAGCGCACATGGAGGCGGCCCACGGGGTCCCAGCTCCTGCATGCGGCGTTTGCAACAAGAAATTTTCTTTCCCCAACCAATTGTTGCGTCATCAGAGAATCGTGCATATGGGGGAAAAGTCCTTCCCATGCCCAAGTTGCAACATGAGATTTGCCACGAAACACAAACTGTCCTTGCATTCCGTGAAACATACGGGGGTTAGGATGTTTAAGTGCGAGTACTGCGAGAGAGCTTTTAAGTggaaaaagaatttaaaaacgcaCGTGATGATGCATCTGAATGATAAAAGACAGGTGTGCCCGGTGTGCCAGGCGGCGTTCGTTCAGTGCAGCAGCCTCAAGTACCACATGACGAGGCGGCATCCCGAGATGGTTTGA
- Protein Sequence
- MYFKQHHKNVHLKLKLGACYICGVKIPAHLRAAHLEKSHGIPAPTCGICNKKFSFPNQVLRHHKSEHMGERNYECVTCNMRFPTKDRLKRHEIKHSPIETFVCNYCGKSFKWKKNLFTHIKIHLNDRRSTTILPYTLTKADDGTDDFECDICGRVFKKRHNFAQHYNQVHLNKKPKLRACHRCDVKVPGYLRAAHMEAAHGVPAPECLACNRKFAYPHQVIKHQKIHHMGEKDFECNICHMKFSLRYRLLHHMIKHTQTRKYICDHCGKSFRSPTIPYTLTKADDGTDNFACDICGRVFKKRRNFAQHYNQVHLKKRPKPRTCHRCDVKVPGYLRAAHMEAVHGVPAPECLTCNRKFAYPHQVIKHQKIHLKGEKDFECKSPTIPYTLIKADDGTDSFACDICGRVFKKRKNFAQHYQHVHLKKRPKRRACHRCDVKVPTYLRAAHMEAVHGVPAPKCLACNRKFAYPHQVIKHQKTDHMGEKNFECKICHMKFSFLGRLSRHMVKHTQTRKFICDLCEKSFRWKNNLRNHMSPTIPCTLTKADDGTDNFACDICGRVFKKRKNFSQHYRHVHLKKRPKLRACHLCDVKVSTYLRAAHMEAAHGVPAPTCLACNRKFPFPHHVIKHQKTDHMGEKNFECNICHMKFSILASLSRHMKVASHMKAAHMEAAHGVPAPACGVCNKKFSFPNQLLRHQRIVHMGEKSFPCPSCNMRFATKHKLSLHSVKHTGVRMFKCEYCERAFKWKKNLKTHVMMHLNDKRQVCPVCQAAFVQCSSLKYHMTRRHPEMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -