Mita019080.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452997.1:3060953-3065842[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.005 0.28 12.0 0.8 3 23 12 32 10 33 0.94 2 32 0.0088 0.5 11.2 1.8 2 23 39 61 38 61 0.94 3 32 0.0046 0.26 12.1 1.5 1 23 66 89 66 89 0.93 4 32 0.00024 0.014 16.2 3.3 1 23 93 116 93 116 0.96 5 32 0.0033 0.19 12.6 0.4 2 23 123 144 123 144 0.96 6 32 2.5 1.4e+02 3.5 0.0 2 20 235 253 234 254 0.89 7 32 0.016 0.89 10.5 0.2 2 23 278 299 277 299 0.96 8 32 0.00033 0.019 15.7 2.1 1 23 304 327 304 327 0.95 9 32 0.012 0.68 10.8 1.8 1 23 331 354 331 354 0.93 10 32 0.04 2.3 9.2 0.6 3 23 358 379 357 379 0.97 11 32 0.0079 0.45 11.4 3.6 1 23 455 478 455 478 0.94 12 32 0.012 0.66 10.9 0.0 2 23 506 528 505 528 0.95 13 32 0.006 0.34 11.8 0.2 1 23 550 573 550 573 0.96 14 32 2.7e-05 0.0015 19.1 0.1 3 23 580 601 578 601 0.95 15 32 0.0094 0.54 11.1 0.2 1 21 606 626 606 629 0.91 16 32 0.21 12 6.9 2.1 2 23 635 657 635 657 0.93 17 32 2.3 1.3e+02 3.6 7.8 1 23 661 684 661 684 0.97 18 32 2.6 1.5e+02 3.5 3.9 1 23 728 750 728 750 0.95 19 32 4.1 2.4e+02 2.8 0.0 3 23 779 800 777 800 0.86 20 32 0.0051 0.29 12.0 0.7 1 23 820 843 820 843 0.97 21 32 3.8e-05 0.0022 18.7 0.3 1 23 848 871 848 871 0.96 22 32 5e-05 0.0029 18.3 0.5 1 23 876 899 876 899 0.97 23 32 0.00033 0.019 15.7 0.9 2 23 902 924 902 924 0.94 24 32 0.32 18 6.3 4.2 2 21 931 950 930 951 0.94 25 32 0.0027 0.15 12.9 1.0 1 23 1005 1028 1005 1028 0.90 26 32 0.018 1 10.2 0.0 2 23 1101 1123 1100 1123 0.95 27 32 8.3e-05 0.0047 17.6 0.2 3 23 1130 1151 1128 1151 0.94 28 32 0.33 19 6.3 2.1 2 23 1156 1178 1155 1178 0.94 29 32 0.00094 0.054 14.3 3.3 1 23 1183 1206 1183 1206 0.97 30 32 9.1e-05 0.0052 17.5 5.2 1 23 1210 1233 1210 1233 0.97 31 32 0.00061 0.035 14.9 0.3 2 23 1240 1261 1239 1261 0.96 32 32 1.3e-05 0.00072 20.2 0.7 1 23 1267 1289 1267 1289 0.98
Sequence Information
- Coding Sequence
- ATGAACGAATTTCATTCTAAGAATAAGATCATCTGCTCATACTGCGGCATGGCTTTCGGCAAAGATCCTAATTACAGATCACACTTGAAACGTCACCACAACCCTAACAGTTGCAAATGCAATGATTGCGAATTGGACTTCGACAATTTGTCGAAATTATCAAATCATCGGGCCAAAGTCCACGGGGAGAAGACCTTCAAATGTCCGAAGTGCTTCGAGACTTTCGGCACGCAGTACAAGCGGCAGAAGCATTTGATAGACGTCCACGGCTCTGGACATCCGTGCTCCTACTGCGGGAAGCTGTTCACGAGGAATTCCTTCATGAAGGACCACGTGCGACGGACGCATCTGAAGGAAAAGAATGCGGAATGCTCCGTTTGCAAGGAGAGGTTCTTCGACAACATCCTCCTCAGGATACACATGGTGAAACATGTTGGGGAGAGGAATTTCCACTATGAAAATCCGTCAAAGGGTGCCAATAGACTCAGGAGGAGAAATCTGCAAATACTGTTCAACAACACAACAATGATACCTTTTAAGTGGCGCGGAAAGTATATGTGTTTCTATTGCGGGGTGGATGTTCTCGCCTACGAGGAATTAAGGAAACATACCTTAGCTCACGGTCCCTGCTCAGACAAAGACAGGGCTATAAGACTAGTGAAATCAAACGACGCTGAAGTCAAAATAGACGTATCCGAAATCGTTTGCGAACTTTGCAACGTGCGGTTTGCTAATTTCGACGAAATCGTCGAACATTTGATCTGTAAGCATAAATTGCCATACGAGAGAGACGTGGAACTGATGATAATGACTTATCGCCTCGTCGATCTGAAGTGTCTGCTGTGTGGCGAGGGATTCGATTACTTCGGAAAGTTGATCACCCATTTGAACAATCATTCGGTTAAGAGTTTCTTGTGCGATAATTGCGATCAGAGGTACAGTAAAAAGAGAGATTTGCGGTCGCACGTCAGAACCCGTCATAGGAATGAATATAGCTGTCTTAAATGTACGCGAGTCTTCAACACGTTCGGGGAACTTCATAACCATAAAGCGAATGCTCACGTTTCCGCCTGCAATATATGCTTAAAGACATTCGCATCTGACGGTAAAAGGTTGAAGCATATGAACAAGGAACACGATTTTGATGGAGTGTTGCAATGCGGTCTTTGTTcgataataatgaatacaaagcaGGCCTTTTTGAGGCATGCAGCCAAATGTAACATCATTGATGAATCTAAAGCGGCCGAACTCCAAATAGATGATGATAGAAAGGAACCGAACGTGAGACAAATACGAGGGAATATCGCGTGTATTCTTAACATGTCTACAGCGATGCCGTTCAAGCATTTCATGAATAAGTTCAGATGTTTCTACTGCCCTAAGGATTTCATAGAGTGTGATGATTTAAAGCACCACACCGTCATGGAGCATCCTCAATGTAACACCAAACAGAAATGCATGAGGTTGCGGAACAGAAATGAGCTAAGCATCAAAATTGATACGTCGTCCATGTCGTGCAAAATATGTTTCGAGTCCTATTCAGATGTGGACGCGTTGATCGACCATTTAATATCCGAACACAAAACTCGCTATGACAAATCCATCCCGCACCTGTTTCAATCGTTCAAACTGATCAAAAACAACTTCGCGTGTCCCTATTGCGAAGTGATCTATAGCTACTTCGGTACCTTGCTCAAGCACATTAGTAAAGAACACgcgaataataaaataatttgcctGTATTGCGGTAAGGCATTCCGTACTGATGCGAATCTGAGAGCTCATATAACGCGGTATCACAGAGCCGGCCGCTACAAATGCTCGGTTTGCGAGTCCCTTTTCACGTCTCGCAGCGGTTTGCAAGTGCATTTAGGTGCGAAACACGGCGTGAAGTACGCGAAATGCCCGCAATGCGCAGATACATTCACGTCGCAGCATCACGCTCAAAAACATTTGATAGAAGTCCACGGCACGGGTCACAAGTGCTCGTTTTGCGGCAAGCTTTTCCCCAAACATTGCTCCATGCTGAGCCACGTCAAACGGCAACATTTGAAGGAGAAAAACGTCGAATATGAATTACCAGGCCCGTACGACGGCTTTATCTCTGAGCGGAGAAGgaaaaacttacaaatactGTTCAACAACACGACAATAATACCGTTCAAATGGCGAGGCAAGTACCTCTGTTTCTACTGCGGGAAAAACCACACGGAATACCCGGAGTTCAGAAAGCACACGAAATCCCACGGCCCGTGCTCCACGAAAGATTACTCCTTGAAGATAATAAAAGGGAACCACGTCGAAATAAAGATTGACGTCTCCGAAATAGCGTGCGACGTCTGCAACGAACCGTTCGGGAGTTTCAACGAGATCGTCGACCATCTGATCGGGAAACATTGCATGGAGTACGACAAAACCATCGACATACCACTGCAAGAATACAGACTGTCAGATTTTCGATGCCTCTTCTGCCAGCAACAGTTCACGTATTTTGGAAACCTAATCAGTCACGTGAACATAGCGCATCCGCAAAACTGCTTCATCTGCGACGACTGCGGCGTCACTTTTAACAAGAAGAGGGATTTGGCTATACACCTGAGGAATTACCACCGAGAGGGAGGCTACACTTGCGATCAGTGTCCAGAAGTGTTCGAGTCCCGCAGCACATTGCGTGGACACCAAAACAGTTATCATTTCAGAAAGTGCAAATCCTGCGATTTGTCGTTTGCCTCTTACAGTTTACTACAAAAGCATATTCAGTTCGACCACCCCGATGACGGTTGTCTGAAATGCAGTTATTGCTACAAGATATGTCATTCGAAGCAGGGTTTAAAACAGCATTTGAATAAATGTAAAGTCAAAATCGTTTCTCAAGTAGAAACCGCTGTCAGCGCGGTGTTCTCAGAGGGCATTGAGCCCAAAAAGAAACAGAACGTGGCACAGATCAGAGAAAATATATTGTCTGTACTCAATATGTCAACAGCTGTACCTTTCAAGTTCTTCTCGAAGTATTCCTGTTTTTATTGTTCGAAGAAGTTCGTGGATTTCGAGGAGCTTAAAGAACACACAGTGTTAGAACACCCTGTGTGCGATTTGAAATCCAAATGCATTAAGAAGTGCAAAGGCGAGCGCACGAGTGTCAAAATTGACATAACGGGTTTAGCTTGTAAAGTGTGCTGTCAGTCTATGAGCGATTTGGACGACTTAATAGATCATTTAGTATCAAAACACAGCGCCAACTATGACAAATCCGTATCAGGATGCTTAGAACCTTTCAGGATCGTAAAGGACAACATGCCCTGCCCGATATGCGAGCAAGTATTCAGATATTTCGGGATATTATtgagacacataaactctgaGCATAGCGACAATAACAGCATTTGCGACTTTTGTGGACGCAGCTTCAAAAACGTCGCGAACCTCAACGTTCATATATCGTACTCCCACACCGGCTCCGTAGAATGTGACGTTTGCCTgtcgaaatttaaaaaccaGTGGTGTCTTTCGCGGCACAAAGCAAAATCTCACAACGCGAAGGATTTCAAGTGTCCAAAATGCCCTGAAATGTTTCAGTCCCAGTACCACAAGCAAAAGCACCTGATCAAAATGCACGATGTAGGCCACAAGTGCACGTTTTGCGGGCGGATGTTCACGAGAAACTCTTTCATGAAGGACCACATAAGACGGACCCATTTAAAAGAGAAGAATGTACCATGCTCTGTTTGCAACGAGAAATTTTTCGATAATTACCTCTTGAGAATGCATATGGTTAAACATGAGGGCGATAGGAAGTTTACTTGCTCGGTGTGCGGGAAGGCTTTTCTTAGGCGCAGCAATCTTTACTCGCATATGGAGATGCACAAAAAGTATGGGCATATGCAAGTGCCGGTAGTATAG
- Protein Sequence
- MNEFHSKNKIICSYCGMAFGKDPNYRSHLKRHHNPNSCKCNDCELDFDNLSKLSNHRAKVHGEKTFKCPKCFETFGTQYKRQKHLIDVHGSGHPCSYCGKLFTRNSFMKDHVRRTHLKEKNAECSVCKERFFDNILLRIHMVKHVGERNFHYENPSKGANRLRRRNLQILFNNTTMIPFKWRGKYMCFYCGVDVLAYEELRKHTLAHGPCSDKDRAIRLVKSNDAEVKIDVSEIVCELCNVRFANFDEIVEHLICKHKLPYERDVELMIMTYRLVDLKCLLCGEGFDYFGKLITHLNNHSVKSFLCDNCDQRYSKKRDLRSHVRTRHRNEYSCLKCTRVFNTFGELHNHKANAHVSACNICLKTFASDGKRLKHMNKEHDFDGVLQCGLCSIIMNTKQAFLRHAAKCNIIDESKAAELQIDDDRKEPNVRQIRGNIACILNMSTAMPFKHFMNKFRCFYCPKDFIECDDLKHHTVMEHPQCNTKQKCMRLRNRNELSIKIDTSSMSCKICFESYSDVDALIDHLISEHKTRYDKSIPHLFQSFKLIKNNFACPYCEVIYSYFGTLLKHISKEHANNKIICLYCGKAFRTDANLRAHITRYHRAGRYKCSVCESLFTSRSGLQVHLGAKHGVKYAKCPQCADTFTSQHHAQKHLIEVHGTGHKCSFCGKLFPKHCSMLSHVKRQHLKEKNVEYELPGPYDGFISERRRKNLQILFNNTTIIPFKWRGKYLCFYCGKNHTEYPEFRKHTKSHGPCSTKDYSLKIIKGNHVEIKIDVSEIACDVCNEPFGSFNEIVDHLIGKHCMEYDKTIDIPLQEYRLSDFRCLFCQQQFTYFGNLISHVNIAHPQNCFICDDCGVTFNKKRDLAIHLRNYHREGGYTCDQCPEVFESRSTLRGHQNSYHFRKCKSCDLSFASYSLLQKHIQFDHPDDGCLKCSYCYKICHSKQGLKQHLNKCKVKIVSQVETAVSAVFSEGIEPKKKQNVAQIRENILSVLNMSTAVPFKFFSKYSCFYCSKKFVDFEELKEHTVLEHPVCDLKSKCIKKCKGERTSVKIDITGLACKVCCQSMSDLDDLIDHLVSKHSANYDKSVSGCLEPFRIVKDNMPCPICEQVFRYFGILLRHINSEHSDNNSICDFCGRSFKNVANLNVHISYSHTGSVECDVCLSKFKNQWCLSRHKAKSHNAKDFKCPKCPEMFQSQYHKQKHLIKMHDVGHKCTFCGRMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRMHMVKHEGDRKFTCSVCGKAFLRRSNLYSHMEMHKKYGHMQVPVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -