Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 5.1e-18 1e-14 54.2 0.0 1 43 28 71 28 73 0.95

2 2 1.6 3.2e+03 -1.7 1.6 6 15 159 168 155 170 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	5.1e-18	1e-14	54.2	0.0	1	43	28	71	28	73	0.95
2	2	1.6	3.2e+03	-1.7	1.6	6	15	159	168	155	170	0.83

Coding Sequence: ATGTGGCAGAAGTGCTGGAACACCAACCAGAGCTTGGTGCACAACCTGAGGTTTCGGGAGCGTGGCCCCCTCAAGTCCTGGAGGCCAGAGACCATGGCCGAGGCTATCTTCTCGGTCCTGAAGGAGGGGCTGTCGCTGTCGCAGGCTGCCAGAAAATACGACATACCGTACCCCACTTTCGTGCTGTACGCCAACCGTGTCCACAATATGCTCGGTCCAAGCGCAGACGGGGGCGCAGATTTGAGACCGAAGGGTCGCGGGCGGCCGCAGCGCATCTTGCTGGGCGTTTGGCCTGACGAACACATTCGCGGTGTGATCCGCGCCGTCGTGTTCCGAGACACACATGCACCGCACCCCACGCACGCCATCAAGGACGAAGTGCTGCATTCCATTACGGACGGCATGGGGGTGCAGAGCGCGTACGTGCCGTGCGGGAACGGGCGCGAGGGCGGCGTGTCCCCGAACGCGGCCGCAGCGGCCGCCGTCGCCGCCGTGGCGCACGGCCTGCGCCGCCAGATGTGCAACATGGTGGTCGACCACCCGCCGCACCTCGGCCTGCCCCCGCTGCCGCTGCAGTCGCCGCGGCTGCCGTCGCCGCTCACCGCGAGCCTCGAGTCGCCGCTCTgctccccgccgccgccgggacTCGCCCTGGAGCCGGCCAAGCACGACCCGTTCCGACCCTTCGCATCCCCTCGCCCCGACAGCCGCTACAGCGAGCGTGACGTCGTGCCTGAGATCACAGAGATGGGGCCGCCTAAGACCCCGGTACAAGTCGCCAAGAACGGGAAGGATCAGCTGCCGACTCCGATGAACATGGAGCCGCCGATGGCGGAGGCTCGCGCTGAGAACATGTGA
Protein Sequence: MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPHPTHAIKDEVLHSITDGMGVQSAYVPCGNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVDHPPHLGLPPLPLQSPRLPSPLTASLESPLCSPPPPGLALEPAKHDPFRPFASPRPDSRYSERDVVPEITEMGPPKTPVQVAKNGKDQLPTPMNMEPPMAEARAENM

Sequence clustering based on sequence similarity using MMseqs2