Mita009232.1
Basic Information
- Insect
- Metalampra italica
- Gene Symbol
- -
- Assembly
- GCA_949699065.1
- Location
- OX452980.1:484237-492253[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-11 6.7e-08 32.4 0.0 3 39 185 222 183 226 0.89 2 4 1.8e-12 3.6e-09 36.5 0.3 2 39 238 275 237 278 0.93 3 4 7.4e-15 1.5e-11 44.1 0.1 2 45 293 337 292 337 0.96 4 4 1.4e-18 2.9e-15 56.0 0.0 1 42 344 386 344 388 0.95
Sequence Information
- Coding Sequence
- atGCCCGGTTACCAACTGTCCCAAGTAAAATGCGAACCTTCATCAGAAGACGAAGACAGCAACTCTCAATATTCCCCGAGCTATTTTCATAACCAGACAATATCATCGGAACTCCGTCCCATTAAGTTAGAACCGGGAGCTCACAGCGAAGAGCATGCACCAGCCCACCTTCTGCACCATTTGCAGGtgtccggcggcggcggcgggctggaGGACCTGTCGCCGCTGGCGCTGGCGCCGGCGGGCCCGGCCGCCACGCcggtgcgcgcgcggcccGGCGCGCCCGACGCCGccgacgcgccgccgcccacccTGGAGACCCtgcacgccgcgccgcgcgacaACACCACGGGCTCCACCCTCATCGGGCGGCACATGTCGATGCTGAGCGCGGCCGAGCTGCACGACTCCGCAGACTTCATGCCGCTTCTAGCAGTCAAGGACGAACCGTTGtcggaaggagAGCAACAGGCGCAGAGCGGCGACGACACGAGCGACTCGTCGTCGCCGCTggagggcgcggcgcgcgggagCCCCAAGAGCTGGACGCAGGCCGACATGGACGGCGCGCTCGAGGCGCTCAGGAAACACAACATGAGCCTCACCAAGGCGTCAGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCGTGGGCCGAGGGCGACCTGCGCCGCGCGCTGCACGCGCTGCGCGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCATACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCAGACCTGGagcgcgcgctcgccgccatccgcTGCGGCGCCGCCTCCGtgcagcgcgccgccgcgcagttCGGGATACCCACCGGCACGCTGTACGGGCGGTGCAAGCGAGAGGGCATCGAGTTGTCCCGCTCCAACCCCACGCCGTGGTCCGAGGACGCCATGGGAGAAGCGCTCGAGGCGGTCAGGGTGGGGCAGATGTCGATCAACCAGGCCGCCATCCACTACAACCTGCCCTACTCCTCGCTCTACGGCCGGTTCAAGCGCTGCAAGTACCAGCCACAGGGATACCAGCTAATGCAGCAGGACCTGCAGAAGCCTAACGACATGGACCCCCAGCAACCGCAAGAGCTCAACCAATACTACCACCAGACCGCACCGTCCCACACCGTCCACCACCTCCCCGACGACCAGACCCCGATGCCCGAAGAGCACGCCCCCCAGTATTACCATCAAGGGGGGGAGGAAACGTTGGTCCATGACCATGAGCAGTATGGTGGGGGGCAGTTGTACTACGCGCAGTGCAATATGGCCAGTTGA
- Protein Sequence
- MPGYQLSQVKCEPSSEDEDSNSQYSPSYFHNQTISSELRPIKLEPGAHSEEHAPAHLLHHLQVSGGGGGLEDLSPLALAPAGPAATPVRARPGAPDAADAPPPTLETLHAAPRDNTTGSTLIGRHMSMLSAAELHDSADFMPLLAVKDEPLSEGEQQAQSGDDTSDSSSPLEGAARGSPKSWTQADMDGALEALRKHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWAEGDLRRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQGYQLMQQDLQKPNDMDPQQPQELNQYYHQTAPSHTVHHLPDDQTPMPEEHAPQYYHQGGEETLVHDHEQYGGGQLYYAQCNMAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -