Mfus015100.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465380.1:7793701-7796525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.52 33 5.2 0.8 1 23 74 96 74 96 0.95 2 20 0.00012 0.0075 16.7 1.3 1 23 107 130 107 130 0.97 3 20 0.0013 0.084 13.4 1.8 1 21 135 155 135 156 0.93 4 20 0.00024 0.016 15.7 1.8 2 23 162 183 161 183 0.93 5 20 0.26 16 6.2 0.6 2 21 189 208 188 209 0.93 6 20 0.018 1.2 9.8 0.6 2 23 228 250 228 250 0.93 7 20 0.23 14 6.4 2.1 1 23 255 277 255 277 0.98 8 20 0.011 0.73 10.5 1.3 1 23 282 305 282 305 0.97 9 20 7.8 5e+02 1.5 0.9 1 10 309 318 309 320 0.86 10 20 0.38 24 5.7 3.8 3 23 449 470 448 470 0.92 11 20 0.044 2.8 8.6 0.4 1 23 476 498 476 498 0.97 12 20 2.8 1.8e+02 2.9 0.5 1 12 505 516 505 523 0.87 13 20 0.014 0.91 10.1 3.8 2 21 539 558 538 559 0.93 14 20 0.55 35 5.1 0.2 1 23 631 654 631 654 0.96 15 20 0.28 18 6.1 0.1 2 23 661 680 660 680 0.92 16 20 0.016 1 10.0 0.6 1 23 686 708 686 708 0.85 17 20 0.59 38 5.1 0.5 1 20 713 732 713 734 0.92 18 20 6.6e-05 0.0042 17.5 0.5 2 23 747 768 746 768 0.97 19 20 0.00061 0.039 14.4 0.6 3 23 782 802 780 802 0.97 20 20 0.064 4.1 8.1 3.5 1 23 808 830 808 830 0.96
Sequence Information
- Coding Sequence
- ATGAGTGACAATAGTGACGAAGAGATGCCTCTGGCTAGAGTAAGAGCAGAAGTTCTAGGTAGCAGCAATGATGGTGAACCCTTCAGACCCCGGCAAACTTCGCTGGGCACCAAACGTCTAAAACGAGTGAACAAATCAGTAATCAAATGTGGGAGATGTATGAAGAAATGTAAATCGTGTGACGAATACATGAATCACTCTTGTTCCGGCCCTACCACATTCTACTGTGATATTTGCAGCAGCCCCTACTTCAGTTTTAAGCGTCTTTCAAAGCACATCGAGGCACATTTTGATCGACAGTGTCGAGTTAGTAAAAATTTTACGTGTGACTTTTGCCGAAAAGTCTTCAGTATCCGTTCAAAGCTGCAGGTCCATTTGTTGAAAGAGCACTTCAGCATTGAACACCGCTGCGACAAATGTGGGAGATATTTTGTGTCTGAAGAAAACTTGGCTGTGCATAAATGTAGGAACGGGGCCCCTCTGCCCTGCCCCCAGTGTGGGTTAGAGTTTACTCgcaaaaatttactgaaaaaacaTTGCCTCACACATTCTAATTTAGCCTGGAGATGCGAGTTTTGCTACAATATGTTTATGAAGGAGAGCACGTACAAGGCACACATGTCGAAGTTAAACTGTTCAAAAACAGCAAGGAATGATTGGTTGATAAAGTTGGACGCAAACGTTTGCCGCGAGTGTAGCGAGAAGTTTGAgtcggaaaataatttaatgatCCATTTTAAAGAAAGGCATTTTGGAAAGCCATACCAGTGTCACTGGTGTGAAAACCAGCTAGCGACATTTGAAGAATTAAGACTGCATGTCCACAGTCACAATGTGGAGAAATACACGTGTCGTGAGTGCAACAAAGCATACCTGAGCCAAGAAGGATACAGGAAGCATCGTCTAAGACTGCATAGTGCCAAGTTCCAATGTCATTTTTGTGGATCAGAGTTCCTGACCCATGGGCGCTCAATCTTGCATgagaagaaatgtaaacaaaatccagattTTGCTATTGTTTCGTTAAATGCAGCAAAACCTTCTCGTATAAAGCAATCTCGGCAACTAAATTGGGAGAGCCGGATCATTGTCAGGAAAATTCGAGGTGTCGCTGAAGAAGACGAGAAGTCGAACGAAGCCCCGAGTGCAGATCTGGAAGAGACTGAAGACTCGTTATCGGACCGTAGGGGGTGGTTTGATGATTACTACAGAACGGCAGAAGATACTGGGAATAACGACGATACTCCCGGGCTGGAACCAGAGGCTACATCTTCAGCCAGTAGTGACAGTTCTGAAGATGAAGGTGATCATGTTGAGCAGGAGATTGACTTTAATTATAGACTTTGTCGTATCTGCGGCTTAGCATGCTCCCATGAGTACGAACTTCTTCACCACTTTGTTAAAAACCATCCCGGGGAGATCCCACATCAGTGTCCTTATTGCGAAGAAAAAGCTCCCCTGTTCGCTCAACTAAAAGAGCACTGGAAATCGCATGGCATAGGGTTGGGAGTTTTTCACTGCGGCAGTTGCAGTAAAGCGTTCCGGTCTGAGGCGCGTGGCAGGAGACACTCTGCTCGATGTCgcggtgacgtcactgagtGGCCAAGTACCAAAGTGTGTCGAAACTGCGGAAAATCATTTCAAACCAAGTGTGGTTACAAGAGACATAAGAAATTGTCCTGTAAACGAGAGAAAAAGGTTCCCGTACCTCAAATCGATTTGCCCACTCATTCAGACGCTGAATCATGGCATGCTGATGATCCTGAACCTGAAGACCTTGTACATATTAATGTTCCGGAGATACCAGCACCTCTGCCTGAACCGGTGCAAGAAATCACGCATAGTTCGGGTTGCAAAGAAAATGAGCCAAAATTGCCACCCCCGGATAAATTTCCTTGCCGCCTGTGTAGCGCTGCTTTCCCGTTTGAGCGTGGATTGGTGATGCATTTCAAACGACAACATCCAGGCTTGAAACCACTAATTTGCCCCGAGTGTGGAATTGCTCTGGCGGATAAATTGAAGGAACATCTCAAGACTCATGGTATAGGGGAGGAATTTGTCTGTGAACTCTGTGGTAGACGATTTAATCAAAAATTCATGAGCAAAATTCACGAATTGTGGCACGAAGGTATTGAGTACAAATGCTTCAActgcaaacaaaaattccTGTCCGAAGAAAAAATGGCTCGACACATTTCTGGAGCAAAATGTTTGAATCGGCAAAGTCTGATGAAAATACCTTGTGAGGTCTGCGGTAGACACTATCGCTCCAGCTTCGGCCTAAAAGCTCACTACCTCACACATACTCCTCGGGAGCTTCGCCCTGTGAAAAACCGAATGAACTGTGAATTTTGTGGGAAATGGTTCGATAGTAATAATGGGCTGCAAAGACACAGGCGGATACATAccggagagaagcctttctgcTGTCGGTTTTGTCCCAAAGCCTTTGCTCAGGAGGGAAACTGCAAAGCTCATGAGCGGCTGCACACGGGCGAGTCAAAGCCAAGGAAAAAGAAGCCTGAACCTGCTGCCGAAAATACCATTTACGTTTGCGTACCGGTCGGCACTGTCTTGCAATAA
- Protein Sequence
- MSDNSDEEMPLARVRAEVLGSSNDGEPFRPRQTSLGTKRLKRVNKSVIKCGRCMKKCKSCDEYMNHSCSGPTTFYCDICSSPYFSFKRLSKHIEAHFDRQCRVSKNFTCDFCRKVFSIRSKLQVHLLKEHFSIEHRCDKCGRYFVSEENLAVHKCRNGAPLPCPQCGLEFTRKNLLKKHCLTHSNLAWRCEFCYNMFMKESTYKAHMSKLNCSKTARNDWLIKLDANVCRECSEKFESENNLMIHFKERHFGKPYQCHWCENQLATFEELRLHVHSHNVEKYTCRECNKAYLSQEGYRKHRLRLHSAKFQCHFCGSEFLTHGRSILHEKKCKQNPDFAIVSLNAAKPSRIKQSRQLNWESRIIVRKIRGVAEEDEKSNEAPSADLEETEDSLSDRRGWFDDYYRTAEDTGNNDDTPGLEPEATSSASSDSSEDEGDHVEQEIDFNYRLCRICGLACSHEYELLHHFVKNHPGEIPHQCPYCEEKAPLFAQLKEHWKSHGIGLGVFHCGSCSKAFRSEARGRRHSARCRGDVTEWPSTKVCRNCGKSFQTKCGYKRHKKLSCKREKKVPVPQIDLPTHSDAESWHADDPEPEDLVHINVPEIPAPLPEPVQEITHSSGCKENEPKLPPPDKFPCRLCSAAFPFERGLVMHFKRQHPGLKPLICPECGIALADKLKEHLKTHGIGEEFVCELCGRRFNQKFMSKIHELWHEGIEYKCFNCKQKFLSEEKMARHISGAKCLNRQSLMKIPCEVCGRHYRSSFGLKAHYLTHTPRELRPVKNRMNCEFCGKWFDSNNGLQRHRRIHTGEKPFCCRFCPKAFAQEGNCKAHERLHTGESKPRKKKPEPAAENTIYVCVPVGTVLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -