Mfus000269.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465373.1:2256150-2257692[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0041 0.26 11.9 2.4 1 23 126 149 126 149 0.97 2 10 0.0032 0.21 12.2 0.5 1 23 154 176 154 176 0.98 3 10 0.00069 0.044 14.3 0.5 1 23 182 204 182 204 0.99 4 10 0.00013 0.0083 16.6 1.2 2 23 210 231 209 231 0.94 5 10 0.0045 0.29 11.7 0.1 1 23 237 259 237 259 0.97 6 10 1.8e-06 0.00012 22.4 0.2 1 23 265 287 265 287 0.97 7 10 0.44 28 5.5 0.7 1 19 293 311 293 315 0.78 8 10 6e-05 0.0038 17.6 1.6 1 23 323 346 323 346 0.97 9 10 0.00043 0.028 14.9 1.9 1 23 352 374 352 374 0.94 10 10 0.29 18 6.0 11.0 1 22 380 401 380 404 0.91
Sequence Information
- Coding Sequence
- ATGAACTTCAAAGCGTACACTAAAGATATCGAAATCAGTGCTGTTGTAAAGTCAGTGAGTGATGTTAAAGATTTATTCAGAGCTTACAATATACAaattgaagaagaagaaaatgtgGAAGACGAGTGCCCCGCCATTATTGAGCCCATCATTGAGATGACGTATGATGATTCGGATGATGGCTCAAACCATGAACCGGAAAAGATTAAACTTgagagggagagggaggaGTTTGGTGAAGACGGGCGCACCTcGAGTTTGGATGGCCGAAATGTGTTGGAGGCTAGCCTGCCTGTGAGTGAGAGTTCCTGTGCGTCGCAGAGTGGCAGTGCGGCGGACACGGGTCAGGATGACGGGAGTGAGACGGGCGGTGTGCACCGCTGTGACCTGTGCGGGGCGGGGTTCCGCATCAAGCACAGTATCACCAAACACAAGCGCGTCGTCCACGGCATGCACCAGTTCTCATGCATGTTCTGCAAGGCCAGCTACCCCCTCAAACGCAACCTACTGGAGCACATCCTCACGCACCGAGGTCCCCACGGGTTCCGCTGCGACATTTGTAACAAGGTACGTCCCAATTACATATCCATACAGCGCCACGTCAAGACTCACGCTGCTAAGAACATCCCCTGCACCAAGTGCGACGCGTGCTTCAAAACAAAGTGGGAGCTCCGCTCGCACGAGATTCAACACCAGGAGGATCGCCGCTTCGAGTGCACCGCCTGCGCCCTCACCTTTGTCAACCCCACTAAGCTGCGAGAGCACGTCGCGCGTCATGGTGGCCGCCGCCCCTACGCCTGTGACATCTGCGGGAAGGACTTCAGCGCGCAGGGTAACCTCACCAACCACCGGAAGCTACACTTCGAGGACAAGCCTTTCAAGTGTCAGTACTGCAGCCTCACGTTCCTCAGCTCTCTAGCGCGTAAAAAGCACATTCCGGTGCATGAGCGGGAGAGACGCAAACCGTACGAGTGCCAGGACTGCAACAAAAAGTACACGTCGACCACCTCGCTGGCCGTGCACAGGCTCAAATTCCACGCGAATGGTCGCGTTTATAACTGTCACTATTGCAAACGAAAGTTCAAAAGCAAGGCTGCGATTACCGATCACGTGGCAGAGCATGCCTCGGAGCGTCCGCACTCCTGTCACCACTGCATGTGCCGGTACAAGAATAAACGAGAGCTGCGGAGACACCAGAGAGAGAAGCAGCACTACGATACTCAGTTTCGCTACCCCATTCCCGGTGATCAGgatgatgacgatgacgaTAGTCCTTGGGAGATGCCTGAACCTGAGGTATGCATCAACGTGGAGAGTGGAGATTCTCTAGCGATCTAG
- Protein Sequence
- MNFKAYTKDIEISAVVKSVSDVKDLFRAYNIQIEEEENVEDECPAIIEPIIEMTYDDSDDGSNHEPEKIKLEREREEFGEDGRTSSLDGRNVLEASLPVSESSCASQSGSAADTGQDDGSETGGVHRCDLCGAGFRIKHSITKHKRVVHGMHQFSCMFCKASYPLKRNLLEHILTHRGPHGFRCDICNKVRPNYISIQRHVKTHAAKNIPCTKCDACFKTKWELRSHEIQHQEDRRFECTACALTFVNPTKLREHVARHGGRRPYACDICGKDFSAQGNLTNHRKLHFEDKPFKCQYCSLTFLSSLARKKHIPVHERERRKPYECQDCNKKYTSTTSLAVHRLKFHANGRVYNCHYCKRKFKSKAAITDHVAEHASERPHSCHHCMCRYKNKRELRRHQREKQHYDTQFRYPIPGDQDDDDDDSPWEMPEPEVCINVESGDSLAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -