Basic Information

Insect: Mesopsocus fuscifrons
Gene Symbol: -
Assembly: GCA_950004255.1
Location: OX465375.1:21965788-21969155[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00023 0.015 15.8 5.2 1 23 266 288 266 288 0.98

2 10 1.1 70 4.2 0.4 8 23 308 324 295 324 0.80

3 10 0.048 3.1 8.5 6.4 1 23 330 353 330 353 0.97

4 10 0.0016 0.1 13.2 0.8 1 23 357 379 357 379 0.99

5 10 0.0023 0.15 12.7 0.8 1 23 385 407 385 408 0.94

6 10 5.3e-05 0.0034 17.8 0.4 1 23 414 436 414 436 0.96

7 10 9.6e-05 0.0062 17.0 3.4 1 23 442 464 442 464 0.98

8 10 0.0016 0.1 13.1 8.4 1 23 486 508 486 508 0.98

9 10 4e-06 0.00026 21.3 2.8 1 23 513 535 513 535 0.97

10 10 3.2e-05 0.002 18.5 4.0 1 23 540 564 540 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00023	0.015	15.8	5.2	1	23	266	288	266	288	0.98
2	10	1.1	70	4.2	0.4	8	23	308	324	295	324	0.80
3	10	0.048	3.1	8.5	6.4	1	23	330	353	330	353	0.97
4	10	0.0016	0.1	13.2	0.8	1	23	357	379	357	379	0.99
5	10	0.0023	0.15	12.7	0.8	1	23	385	407	385	408	0.94
6	10	5.3e-05	0.0034	17.8	0.4	1	23	414	436	414	436	0.96
7	10	9.6e-05	0.0062	17.0	3.4	1	23	442	464	442	464	0.98
8	10	0.0016	0.1	13.1	8.4	1	23	486	508	486	508	0.98
9	10	4e-06	0.00026	21.3	2.8	1	23	513	535	513	535	0.97
10	10	3.2e-05	0.002	18.5	4.0	1	23	540	564	540	565	0.95

Sequence Information

Coding Sequence: ATGGTCTTGGCTAGTTTAGACGTCTGTCGTTTATGTGcccaaaagaagaaaataaaactggaCTTATTCTCAGGCGACGGAGCGTTGCTGCAAAAAATTGTCTACAGTCTGGCTCTGACTaTAATGTTGGAAGACCCATTACCTAAAATGGTCTGCTTTGAGTGTCAGAGGAACGTTGAGCAGCTCCACTCCTTCAAAGTCAAATGTCTCCGTGCTCAAGACAAGTTAAACAGCATTATTAGTGGCCAGGGCACTTCCAAATCGCTTCCTATTGTAAAAGAAGAAatagagcaagaacaagaacacaCAGAACAGAGGCCTCACACTACGTCATGCCCAACGTCCGAGCACAACTACTTCGCTGTGCTAGCGCCGACGCACACTACCGGAAACGTCAAAACAGAGCTCATCTTTCCTTTAGAAACGCCCGAAGACGAAGAGGGTTACAATTCCGACGTAATCTTCGAGGAATTTGTGTACGAAAGAACGTCTCACGACGTGAAACAACCTATTATTGAGGTAGTAGTCGAAAACTACGAAAATATCATTCAGAACGTGGAGGATGGGTCCAAAGTAGAAATAGACACAGCTCACTTTGAAGCGAAACCAAGTGTTGAAGTGACAGTTGAAGAAACTCCAAAACCACCGAAAAGAAGTAGGAGAaaaattatcgataaaaaattaactgatgaGTTTTGCGATCAAGATTTGATGCTAAGAGAAGATGAAGAATGTAACGTCGATATGGAACTCATTGAAGCGACTATCATGAAAAAAGCCGACCCTGATATGCgatttaaatgttccaaatgtaaaaaatcGTTTAAATTCTTCAATGGACTTCGGAAACATCGGTCTGTCCATGAAGTGTCAGACCCGGCCTACGCTTGCAATTTTtgtttggaagaaaaaaatgttagtTATGAATTTGCGAGTTTGAAAACTCTTCAGAAAcatttgtttacaaaacatCTGAGAGATGCAGAGTATCCGTGTAAAATTTGTTCGCAACAGTTTCGAACGCGGAATGAACATAAACATCATATGAAGAACACACACGCTCCGGCTTATAAGTGCAGAGTCTGCgcaaaaaacttcaaactcaAGAGTATCCTAACAGCTCATCTGAAAGTTCACTCGGACATAAAAGCATATGTTTGTAATGAATGCGGGCAAAAGTTTCGGTGGCCAAGTCCTTTCCAGTACCATCTACAAGCTCACCATAACCAAGAAAAGAATTACTTGTGCTCAGAATGCGGGAATAAATTTTCGTCCAGGCGGTCTTTGCTGGACCATATCAACGTTCACAGAGGTGTCAAGCCTTATTCCTGTTCTCACTGTGCTCTCTCATTTGCTCATATATCTTCATTGAAAAAACATCAGAACGTGCACAAGTCATTGAAGCTTACCTCCTTTCTAAAGGCACGCCAGGTGGACCAGTCAGGTGGGAGGACCTTCTCCTGCCACGTCTGCTTTGCGACGTTTACATCCAAGTGCAACCTTTGCAACCATCTCAAGATTCACGGAGAAAAGCGCCACGTATGCGAAGAATGCGGAATGAAGTTTAGCCGAAGTCATCAGCTAAATGATCACATGGTCCGACATACCGGGCGGAAACACAAGTGCCCCGCGCCAGACTGTGACAAAAGCTACACACAACGATATCCGCTCACCAAGCACTTCCGCAAACATCACCCGGAAATGGtgattgtcaacaaaaagggCGGGAGACGGACCTGTGGCGTCAAGAATGAAACAAGTGAAGCTGTTCGGTATGGCTACCGGTATAAAGTTCAGACCGTCTACTTTCTTTCGTAA
Protein Sequence: MVLASLDVCRLCAQKKKIKLDLFSGDGALLQKIVYSLALTIMLEDPLPKMVCFECQRNVEQLHSFKVKCLRAQDKLNSIISGQGTSKSLPIVKEEIEQEQEHTEQRPHTTSCPTSEHNYFAVLAPTHTTGNVKTELIFPLETPEDEEGYNSDVIFEEFVYERTSHDVKQPIIEVVVENYENIIQNVEDGSKVEIDTAHFEAKPSVEVTVEETPKPPKRSRRKIIDKKLTDEFCDQDLMLREDEECNVDMELIEATIMKKADPDMRFKCSKCKKSFKFFNGLRKHRSVHEVSDPAYACNFCLEEKNVSYEFASLKTLQKHLFTKHLRDAEYPCKICSQQFRTRNEHKHHMKNTHAPAYKCRVCAKNFKLKSILTAHLKVHSDIKAYVCNECGQKFRWPSPFQYHLQAHHNQEKNYLCSECGNKFSSRRSLLDHINVHRGVKPYSCSHCALSFAHISSLKKHQNVHKSLKLTSFLKARQVDQSGGRTFSCHVCFATFTSKCNLCNHLKIHGEKRHVCEECGMKFSRSHQLNDHMVRHTGRKHKCPAPDCDKSYTQRYPLTKHFRKHHPEMVIVNKKGGRRTCGVKNETSEAVRYGYRYKVQTVYFLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -