Basic Information

Insect: Mesopsocus fuscifrons
Gene Symbol: Clamp_1
Assembly: GCA_950004255.1
Location: OX465380.1:1045625-1052561[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3e-07 1.9e-05 24.9 1.1 1 23 191 213 191 213 0.99

2 8 0.0023 0.15 12.6 0.2 1 23 276 299 276 299 0.94

3 8 5.3e-06 0.00034 20.9 1.1 1 23 406 428 406 428 0.98

4 8 7.7e-06 0.00049 20.4 3.3 1 23 434 456 434 456 0.99

5 8 1.3e-05 0.00085 19.7 1.6 1 23 462 484 462 484 0.98

6 8 2.9e-07 1.9e-05 24.9 2.4 1 23 490 512 490 512 0.99

7 8 4.2e-05 0.0027 18.1 2.3 1 23 518 540 518 540 0.98

8 8 1.9e-05 0.0012 19.2 0.2 1 23 546 568 546 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3e-07	1.9e-05	24.9	1.1	1	23	191	213	191	213	0.99
2	8	0.0023	0.15	12.6	0.2	1	23	276	299	276	299	0.94
3	8	5.3e-06	0.00034	20.9	1.1	1	23	406	428	406	428	0.98
4	8	7.7e-06	0.00049	20.4	3.3	1	23	434	456	434	456	0.99
5	8	1.3e-05	0.00085	19.7	1.6	1	23	462	484	462	484	0.98
6	8	2.9e-07	1.9e-05	24.9	2.4	1	23	490	512	490	512	0.99
7	8	4.2e-05	0.0027	18.1	2.3	1	23	518	540	518	540	0.98
8	8	1.9e-05	0.0012	19.2	0.2	1	23	546	568	546	568	0.98

Sequence Information

Coding Sequence: ATGTCCCTAAATACGGGGTGGCTGCAGCAGCGTGCCGACCAGCACCTGGGAGGCACCATAGTGATCAAGGCAGAGGACCAGACGCACCTGGGACAGGCCATCGTCATCAAACCTGAAGAGCAGCAGCACCTGTACCTGCAGACTACAGACTCTACTGGGCAACAGCGAGGACTTATTAAGCTGCAGCCGGCTAGCGCCATGCTGGCCTCCAGCAAATGCTCTATGTTCACACAGACTGAGCCCTCCAACAGGTTCACACAGACAGATACCTCAACGGTAAGCGGGACCCTGGTGTCAGGGCGACCAGAAGCCACCATAGCTATGTTCGAGCCCACAGTGCAGCCGCAAGTGTATATTGCGACCACGCTTGAGAAAAAAGATGGCGACAAAAACGAGTTCCCGCTCTGCTATAACGTCAACATGATACAGAAAGTCCCGcttCACACGACTAGTGGGGCGGCGGTGGGCACAGCCGTTATGGACGACAAAGGATGCTACCGACTCGACGTAGGGCAGTCCTTCTCCTACAACTACGTAGTCAATCCGACGTTGATATCAACAGCAGCCTCCTACAAGTGCGAGCTGTGCGGGTTAGTGTTCTCCCACCCGTCTctgctgactcagcacaagAGGGTCCATACTCAGCCTGTTaacgataTTCACTTCCAGGTATCTCAGCATCAACAAATTCAACAATCGTGTGAAACACAGACTCAACAACAGCAACAAGTCCAGGTTCAGGTCCAGgtgcaacaacaacaacaaccccagcagcaacaacaacaacagcagcaacaacaacaacaacaacaacagagcAAGCAGTACATGTGTGACGTATGCGGAATGAATTTTATGTTGTCTGGAGAGCTTAAAAGCCATAAAAACGCCCAACACAAAGACCACCAAGTTACAATGAGCGAACCTTCGCCCAAAGTGACAATAGCTCGACTGTGTGAAGTGTGCGGGGCCGAGGTTACCGTCCACCACGTCCAGGggatcaaaaagaaaaagtttcgaTGTACTAATTGTGCCGAGGTGAATGGGAGTCAGGGGTGCAGTGGAGTTGCAGCTTCAGGTACCAAACCAGGTCACCATCCTGTGAAGAAGAGAGGCATGCCCTGCGTCACCAAGTGCCAGGCCTGCAACGGCAGCGGTTTAATCTTCATAGGGGGCTCGAAACTCAAAAACCAGGCTAACCAGTCTGACAAAACCTTCCAGTGCAATATTTGTGATGGTACCTTCTCTAGGTACTCAAGTCTATGGTCCCACAAACGACTGCACTCTGGCGACAAACCGTTCAAGTGCAACGTGTGCGGTCTGTGTTTTGCGAAGGCGGCCTACCTCAAAAACCACCATCGCGTTCATACGGGAGAGAAACCGTTCCGGTGCGCGACGTGCGGGATGCAGTTCTCTCAGTCACCCCATCTCAAGAACCATGAGAGAATTCACAGCGGAGAGCGACCCTATCAGTGTGAGGTGTGTAACAAGACGTTTGCGAGGCATTCAACCCTTTGGAACCACCGGCGGATTCACACGGGGGAGAAACCTTACAGGTGCAATGTCTGCGACTCCAAATTCAACCAGGCCacccatctcaaaaaccatGCCaagGTCCACACAGGGGAGAAGCCGTACAGTTGTGATACGTGCGGGGTGGCGTTTGCGGACAGGTTTGCTCTTAAAAGACATCGGTCCGTCCATGAGAAGTACGCGAAAGCAAATAATGTCTCCCTCAATCAGGACGTGCCAACGGAGGAGAAGAAACTGGTGCTGACTTTTGCTCAGGCGTAG
Protein Sequence: MSLNTGWLQQRADQHLGGTIVIKAEDQTHLGQAIVIKPEEQQHLYLQTTDSTGQQRGLIKLQPASAMLASSKCSMFTQTEPSNRFTQTDTSTVSGTLVSGRPEATIAMFEPTVQPQVYIATTLEKKDGDKNEFPLCYNVNMIQKVPLHTTSGAAVGTAVMDDKGCYRLDVGQSFSYNYVVNPTLISTAASYKCELCGLVFSHPSLLTQHKRVHTQPVNDIHFQVSQHQQIQQSCETQTQQQQQVQVQVQVQQQQQPQQQQQQQQQQQQQQQQSKQYMCDVCGMNFMLSGELKSHKNAQHKDHQVTMSEPSPKVTIARLCEVCGAEVTVHHVQGIKKKKFRCTNCAEVNGSQGCSGVAASGTKPGHHPVKKRGMPCVTKCQACNGSGLIFIGGSKLKNQANQSDKTFQCNICDGTFSRYSSLWSHKRLHSGDKPFKCNVCGLCFAKAAYLKNHHRVHTGEKPFRCATCGMQFSQSPHLKNHERIHSGERPYQCEVCNKTFARHSTLWNHRRIHTGEKPYRCNVCDSKFNQATHLKNHAKVHTGEKPYSCDTCGVAFADRFALKRHRSVHEKYAKANNVSLNQDVPTEEKKLVLTFAQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -