Basic Information

Insect: Mesopsocus fuscifrons
Gene Symbol: CTCF_1
Assembly: GCA_950004255.1
Location: OX465375.1:5549408-5559719[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00049 0.031 14.8 4.1 1 23 225 247 225 247 0.97

2 11 1.5e-05 0.00096 19.5 1.5 1 23 253 275 253 275 0.98

3 11 0.00025 0.016 15.7 2.8 1 23 281 304 281 304 0.96

4 11 0.028 1.8 9.2 3.3 1 21 310 330 310 332 0.94

5 11 0.00015 0.0096 16.4 1.9 1 23 338 360 338 360 0.99

6 11 1.5e-05 0.00096 19.5 1.1 1 23 366 388 366 388 0.98

7 11 0.0011 0.073 13.6 1.0 1 23 396 419 396 419 0.97

8 11 6.7e-05 0.0043 17.5 2.2 2 23 426 447 425 447 0.97

9 11 0.00042 0.027 15.0 0.2 1 23 453 475 453 475 0.98

10 11 1.1e-06 7.2e-05 23.0 2.2 1 23 481 504 481 504 0.97

11 11 1.4e-08 8.8e-07 29.1 1.3 1 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00049	0.031	14.8	4.1	1	23	225	247	225	247	0.97
2	11	1.5e-05	0.00096	19.5	1.5	1	23	253	275	253	275	0.98
3	11	0.00025	0.016	15.7	2.8	1	23	281	304	281	304	0.96
4	11	0.028	1.8	9.2	3.3	1	21	310	330	310	332	0.94
5	11	0.00015	0.0096	16.4	1.9	1	23	338	360	338	360	0.99
6	11	1.5e-05	0.00096	19.5	1.1	1	23	366	388	366	388	0.98
7	11	0.0011	0.073	13.6	1.0	1	23	396	419	396	419	0.97
8	11	6.7e-05	0.0043	17.5	2.2	2	23	426	447	425	447	0.97
9	11	0.00042	0.027	15.0	0.2	1	23	453	475	453	475	0.98
10	11	1.1e-06	7.2e-05	23.0	2.2	1	23	481	504	481	504	0.97
11	11	1.4e-08	8.8e-07	29.1	1.3	1	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: atgaacaaaaaaatggtgACCCCTGGTGGCCATCCAGGCACTGTAACTCTAGTCAAAGTCGAAACAGAAGGGGATGCCGGGGTAAACGagattcaaaattatttagaGTCTTTTAACAAAGAAATCGAAGGAGGTGGTGAAGTACAAAGAGACGGAAACACCTACTTTGTAGACACCAATGGCCAGTTCTATTACAGTCAGCGGGTCGTCTGCGTTTCCCAAGGGGAAGAAGGAGAGGTCGTACCTACCGAGGCTAGTTCTGGTACCATAGAAGGAACACCAGTAGGAGATGAGGCGGATCCTGTCACCGATGGAACCGTTGCCACTAGTGAGGTAggacctacagtgaCAATATCGGGTGATGGAGAGCCTGTTCTTCTAAGCGCGGGAGGTCAGTATGGCGCAGTCACTCTCGTGCCTCAGGAAAACAACGGAGAGCTCAGCTATGTGCTGTTTGTCCCGACCGCACAGACCAAGCAAGAACATGACTCCGGGCAAAGTCTCGgcgaggaggaggaagaggcGGAGGATGATCAGGACCTAACCGTCTATGATTTCGATGAGGATGGGATTGCGGCTGAACAAGTGGCCAATGACTCTGAGGTTGAAGAAGAGAAACCCAAAGTCATGAAGGTAGTCCATAAAAAGAACCTGCAGAATATAACAACAGCGCACATGTGTAACTACTGTAACTACACGAGTCCCAAGCGGTACCTGCTGTCGCGGCATATGAAGAGCCACAGCGAGGAGCGGCCGCACAAGTGCAGCGTGTGTGAGCGTGGCTTCAAAACGCTCGCCAGCCTGCAGAACCATGTCAACACACACACAGGCACCAAACCTCACCAGTGCCGCTTCTGTGATTCCTCTTTCACCACGTCAGGTGAACTCGTAAGGCACGTACGGTACAAGCATACACATGAAAAGCCTCACAGGTGCTCAGATTGCGATTATGCGAGCGTCGAGCTGAGCAAACTCAAGCGGCACGTCCGCTGCCACACAGGCGAGCGCCCCTATCAGTGCCCGCACTGCACGTACGCTAGCCCCGACACGTTCAAACTGAAGCGCCACCTGCGAATTCACACTGGGGAGAAGCCGTACGAGTGTGAAGTCTGCCACGCCCGCTTCACGCAGTCCAATAGCCTGAAAGCTCACCGGCTGATCCACTCGGTGGCTGACAAACCTGTCTTCCGTTGCGAGCTGTGTCCCGCCACGTGTGGACGGAAAACAGACCTCCGCATTCACGTGCAAAAACTACATACCTCGGACCGACTCCTCAAGTGCCGGCGGTGTGGCAAAACGTTCCCTGATCGATACTCGTATAAGGTGCACAGTAAAACGCATGAAGGAGAAAAGTGTTACCGATGCGGGCTTTGTCCCTATGCCTCGATATCGGCGCGACACCTGGAGTCCCATATGCTTATTCACACTGACCAGAAGCCATATCAGTGCGAGATGTGCGACCAGTCGTTCAGGCAGAAACAGCTGCTGAGGCGTCATCAGAATCTCTACCACACCCCTGACTATATTCCCCCTCCGCCCCGAGAGAAGACGCACGAGTGCCCAGagtGCGGACGGTCGTTCCGGCATAAAGGGAACCTGATCCGGCACATGGCGGTGCACGATCCGGAGTCGTCGACGCACGAGAAGGCACTAGCACTGAAGATAGGGCGGCAGAAGAAGGTGCAGTTCATCGATGGCCAGCAAGTAGAGCTCATGTCCGACGAAGAGGAGGATATGCAGACCACGCCTGGCGTCGTCATGAGCGACGCCAATGGCCAGCCCTACGTTGTCCTGGAGGTAATCCAGCTTGCTGATGGGACAGGGACGGAGTTCGTGATGGCCACTGACGACTCAAGTGACCTTCAAGGGGCGATGACTTTAGATGACCCCGCCCTAGACGATGCGGCCGAGCCCGAGCCTGAAGATCCAATGGTAATGGAGGAGCAGCAACTGATCAAGGTGGAGCGGCGGGTGGATAAGCCGGACGGGATGGACGACTGTTTCGGTTTTGGGgatgaagaggaggaggaagaggagcAAGTGGATGAGGACATGGACCGAAAAGGTGGAATCATCTCTGGAGACTCCAACTAA
Protein Sequence: MNKKMVTPGGHPGTVTLVKVETEGDAGVNEIQNYLESFNKEIEGGGEVQRDGNTYFVDTNGQFYYSQRVVCVSQGEEGEVVPTEASSGTIEGTPVGDEADPVTDGTVATSEVGPTVTISGDGEPVLLSAGGQYGAVTLVPQENNGELSYVLFVPTAQTKQEHDSGQSLGEEEEEAEDDQDLTVYDFDEDGIAAEQVANDSEVEEEKPKVMKVVHKKNLQNITTAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHQCRFCDSSFTTSGELVRHVRYKHTHEKPHRCSDCDYASVELSKLKRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECEVCHARFTQSNSLKAHRLIHSVADKPVFRCELCPATCGRKTDLRIHVQKLHTSDRLLKCRRCGKTFPDRYSYKVHSKTHEGEKCYRCGLCPYASISARHLESHMLIHTDQKPYQCEMCDQSFRQKQLLRRHQNLYHTPDYIPPPPREKTHECPECGRSFRHKGNLIRHMAVHDPESSTHEKALALKIGRQKKVQFIDGQQVELMSDEEEDMQTTPGVVMSDANGQPYVVLEVIQLADGTGTEFVMATDDSSDLQGAMTLDDPALDDAAEPEPEDPMVMEEQQLIKVERRVDKPDGMDDCFGFGDEEEEEEEQVDEDMDRKGGIISGDSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -