Mfus016599.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465381.1:7176088-7178216[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00067 0.043 14.3 0.4 1 19 140 158 140 161 0.92 2 13 0.16 10 6.9 3.1 2 19 166 183 165 186 0.92 3 13 3.6e-05 0.0023 18.3 0.3 3 21 195 213 194 214 0.94 4 13 0.0019 0.12 12.9 0.4 1 23 222 244 222 244 0.95 5 13 0.015 0.98 10.0 2.9 1 23 250 272 250 272 0.95 6 13 0.00051 0.032 14.7 0.8 1 20 285 304 285 305 0.96 7 13 2.1e-05 0.0014 19.0 2.0 1 23 314 336 314 336 0.98 8 13 0.0001 0.0066 16.9 0.2 1 23 342 364 342 364 0.98 9 13 0.00018 0.011 16.1 0.7 1 23 370 392 370 392 0.98 10 13 2.8e-05 0.0018 18.6 0.8 3 23 406 426 404 426 0.97 11 13 7.7e-06 0.0005 20.4 0.7 1 23 432 455 432 455 0.96 12 13 0.0028 0.18 12.4 3.9 1 21 461 481 461 482 0.94 13 13 1e-05 0.00066 20.0 1.1 1 21 490 510 490 511 0.94
Sequence Information
- Coding Sequence
- atgtCGAATGATAGCAGTGAAATCGAAGAAGCCCTGTTGGAACTAAAAGAACTAGACAGGCAGATTGCTGATCTGAAGAATAATTTGCGGGAGCTACAAAAGAGGAGAAAAGTTGTGCTTCTGAAAACCAGACGACAAAAATATCAGGAGAGGAAAGTCAAGACGAAAGAAAACTTTGGTGGCATTACAGGGTTGACTGAAGTTGTGGAAGTATGCTGTGCCATCCAGTTAAAGGAAGAATACGATTCTGATGGAGCTGGAGCAGAGTTGGATGATTCATTTGCGACTGAGCTGTACGCGGAAGAACTGAAAACTGAAGACATCAAAGAAGAAGAATCTACAGACTGTGGAACAGTAGAATCCTGCATAGTACCAgaaggaaaaatcaaaaagaaaCAACTCAACGGCTCGGAGCAATTCCTTTGCGGGATttgtgaaaaaagtttttcaagtaAGACCAAACTAGAAGATCACAACACTTCAATCACCCCTCTAATCTGTAGTGTATGCGATACGAAATTTTGCTACGAGAAGCAATATAAAATACATAGCTGCCTCAGTGCTAAGCTAGGCAGATCTGCATGCCCGACATGCGGAAGGTCGTTTTCTTCAGCCACAAAATTGGCAAAACATACTAAGAGACGAGCTTGTTCAGGTGCTAGGTACCCTTGCGAAGTGTGTGGAAGAAAGTTCCATGTGAAAACTGATTGGAGAATACATTCGGCAATTCATTCTGGTGAAAGGCCGTTCACGTGCGATATCTGTAGAAAAGGCTTTGTTACCAAAACCCGTTTAAAATGTCATCAGGTTGTCCATTTTGGAAAAGAAGTCCAAGACCCACCCGTGGATCGATTCTACTGCGATAATTGTCACAGGTCGTTTTTTTCTTTGGCAGGGTTGACGAAACACATAGTGGGTCGTACCTgtcaggaaaaaaatttcgtatGTGAAGTGTGCGGGAAAAATTTTGAGTATCGGTGCTTACTTAGGAAACATTTAGTCACACACACCAATGAAAAACCTTATACTTGTGATAACTGTGGAAAAGGTTTCGCTCTGAAAAACCGTTTGAAAGCCCACGAGGCTACTCATTTGGGACTTAAACCTTTTCAGTGCGATGCGTGCGGTAAAAACTTCTTGCGGGCTGGAACCTTGAAAAGACATAAGTTGACGCACAACAGTGATGTTTCTTCGGGTACTGCCGGACCTGTCAATTGTCCGGTTTGTCCTAAAACGTTTGCTCATGAGTACATACTGAAAAGGCACTTGAGGAGACATTCTGGTTTGAAGCCGTATGAATGTGAAATTTGTGGAAATGGTTTTTCAGAGAAAAGTAATTTAAAGCAGCACTATACTAGTAAGCATACGGATAACAAGCCGTATCAGTGTGAGACATGTGGTAGACGATGTGCTCGAAAGGGAACTTTAGACAAACATAAATGTAGCGTCACTTTGGCCAATAGACCATACCCTTGCTTAGTATGTGGTAAAAGATTTGCTCGAAAATCGTATCTGAAAGTACACAAGTGTGTTAGCAATGATGAGAAgcaaataaaaactgaaaaggaTGAAAGTAGTGATAGTACTGTAACTGCCGTTAGTAGTGGCGGAGAAATGTGA
- Protein Sequence
- MSNDSSEIEEALLELKELDRQIADLKNNLRELQKRRKVVLLKTRRQKYQERKVKTKENFGGITGLTEVVEVCCAIQLKEEYDSDGAGAELDDSFATELYAEELKTEDIKEEESTDCGTVESCIVPEGKIKKKQLNGSEQFLCGICEKSFSSKTKLEDHNTSITPLICSVCDTKFCYEKQYKIHSCLSAKLGRSACPTCGRSFSSATKLAKHTKRRACSGARYPCEVCGRKFHVKTDWRIHSAIHSGERPFTCDICRKGFVTKTRLKCHQVVHFGKEVQDPPVDRFYCDNCHRSFFSLAGLTKHIVGRTCQEKNFVCEVCGKNFEYRCLLRKHLVTHTNEKPYTCDNCGKGFALKNRLKAHEATHLGLKPFQCDACGKNFLRAGTLKRHKLTHNSDVSSGTAGPVNCPVCPKTFAHEYILKRHLRRHSGLKPYECEICGNGFSEKSNLKQHYTSKHTDNKPYQCETCGRRCARKGTLDKHKCSVTLANRPYPCLVCGKRFARKSYLKVHKCVSNDEKQIKTEKDESSDSTVTAVSSGGEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -