Mfus013346.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465379.1:7656004-7660077[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.7 1.7e+02 3.0 0.4 1 10 13 22 13 36 0.83 2 20 0.007 0.45 11.1 0.4 1 19 49 67 49 72 0.90 3 20 1.2 76 4.1 2.6 1 23 85 108 85 108 0.82 4 20 0.00022 0.014 15.8 0.2 2 23 138 159 137 159 0.97 5 20 2e-06 0.00013 22.2 0.3 1 23 172 194 172 194 0.99 6 20 0.00038 0.024 15.1 2.1 3 23 202 222 200 222 0.97 7 20 2.6e-05 0.0016 18.8 1.9 1 22 228 249 228 249 0.96 8 20 0.00032 0.021 15.3 1.0 1 21 256 276 256 277 0.93 9 20 0.0022 0.14 12.7 1.5 2 23 319 340 318 340 0.95 10 20 0.00051 0.033 14.7 0.5 1 23 346 368 346 368 0.96 11 20 0.0014 0.088 13.3 0.6 1 21 374 394 374 395 0.95 12 20 1 67 4.3 0.8 1 19 402 420 402 420 0.97 13 20 3.7 2.4e+02 2.5 0.1 6 19 434 447 433 449 0.95 14 20 0.012 0.78 10.4 2.0 1 23 453 475 453 475 0.98 15 20 0.00021 0.013 15.9 0.3 1 23 481 503 481 503 0.97 16 20 0.34 22 5.8 0.0 3 23 542 563 541 563 0.94 17 20 1.5e-05 0.00097 19.5 0.8 3 23 584 605 583 605 0.97 18 20 2e-06 0.00013 22.2 0.3 1 23 616 638 616 638 0.96 19 20 5.9e-05 0.0038 17.7 3.4 3 23 646 666 645 666 0.97 20 20 1 67 4.3 2.9 1 11 672 682 672 685 0.91
Sequence Information
- Coding Sequence
- ATGCGGCATATCAACTCATTCCCAGGCCCCCATTACTTCCCATGCGAAGTCTGCGGCATCGCGTTTCTGAAGAATGAAGTTTGCCTCAAACATATTGCAATAAAACACCCCGTGCCTGTTACAGCTCAGCCCTTGAACCAGCCTTTCACCTGTTCAAAATGTGGATCACGGTTCAGCAGTGAAGAATACATGCAAGTACATTCTGTAGAGGTGCATGGTGATTTCGTTAGTAGTGCTGAACCTGACCCGAAATATTGCTGTCAACTGTGTGGTAAAGAGTTTCTCAGCGTGGAGGGCCTCCATTACCACGAGCAAAACCAGCACAAGGACACCGCTGACAAACCTAAACGCAAAAGAAAGGCCACAAATAATGATGCTCAAAAACTTGATGGTCCGGCTAGTATGATTTTAGTCTGCAAAATATGTTCAGCCTCGTTGGACTCAAAATCAGCACTTCAGTCGCACCTCAAGACTCAtaacgtgaaaaaaaacatggaGCTGAAAACTGGCGTCTACCAATGCCTCATATGCCCCAGGTCGTTTTCCAGTAGCGATGGCCTTAAGTATCACTTAGCAACGCATACAGGTGAACGGCGCTACGGGTGTAGTCAGTGCGATCGGCGATTCATCAAGAAGACGCATCTCTCTGAACATCTTGCCACTCACTCGAATGTCAAGTATTTTACTTGTGAGAGATGCCCGCGGACCTTCAGCACGCACTCCGCCTATAAGAAACATATAAAGATGTTTCCTGGCccgcataattttttttgcgcaAAGTGTGGAAAAGTTTTCATGAAGGAGAGCATGCTGGAGAAACACCTGTGCGTCGATTTGGTCGCCATTGCATTGGCTCCTGAGGTGGTGGCACAGCTTTCGGAAGACATGATTGAGGCGTACATGTGCCTTGCGGAGGAGGCGGACAGCGCGGAGCGTACCCGCCCGGGAAGCATGTCCTGCTATAAATGTTTCAAAATCTTCTCCAGTGAGGCTGAGCTACAGGAACACCAACATGAGCACTTGGGCAAACAGTTGTACCAGTGCCGGTTCTGTCCAGAGAATTTCAACCGTTCTGATCTCTTTAGTGCTCATATCGTGAATCATCTGGGCAGCACTCCCTACATGTGTCGCCAGTGTAACCGCAAGTTCATCTCACCATTCACACTTGCGACGCATCTGAAAAATTACCCCGGAGAACATAGTTTCTCATGCACACGCTGTAAAAGATGGTTTCCGAGTTCTGAACGCTTGGAGAAACACGACTGTATTCTACAAAACTCTGACGTCTTCTTATGTGCCTGTTCTAAGCAATTTAagGAGTGGAGTGAGTTCCTTGAACACTTCGGAAAGAAGCCTTTCAAGTGCTGTTCGTGCGCACAGGAGTTTGTAACGTTGACTCCCCTCACTCGGCACATCCAGCGTCACACGGGAAACCGTCCCTTCGCGTGCGACCTTTGCACAAAGGCCTTCCTTACTAAAGCCAGCCTCCAGTCACATCTGAGAATTCATAACAAATCAGAGGCGCAGCTGGCCTGCACCCTATGCGACTACCAGACCTTCTACCAGCGCCGTTTCGACTTCCACATGTCCAAACGTCACGGAGTGGAAGGAGATAATACGCTCTGCCCCGTATGCGGAGTTTTGTATCCCAACATAGAAACAATGAAGGCGCACATTGAGTTAGACCACGAGAACGCTGTGGCTATTGATGACACTTCAGAAGGAAAAAAGTCTCTGCCTACAGAGCTGTGTAATCTCTGTGGAAAAATGCTGACCAATAAGTATTCTCTGAGGTCCCATATGAACAGCGTCCACTGCCCGACGAAGCCCAAAAGCGTCAAGGAGTTCAGTTGCCCGgtCTGTGGGGAGACTTTTCGGCGACTAAATCAACTGGAGCGTCATGGGGAGAAGCATGACGAGCCAGGGCTACGACCTTGTTCCttatgtgacgtcacatgctCTTCACGTAAGGATCTCCGCAAACATATGCGCAAGCACAACACGTACAAGCCCTTCTCGTGCGATAACTGTCACAAACGTTTTAAGGTATGTAATATTACTGAGTGTGGTCAGAACGGCTCCAAAATGACACGATTTGTCGCCGTTAGCCTGAAGTACCATGCCACAATCTGCTCCAAATTATTGCTCCGTAAGGAGCAGGAAGCTAGAGCAACGCTGCAAGTTCCTATTTATGAATTAGAGCCGACGCTTATGACCCCAGTCAAGTGGACCTACTAG
- Protein Sequence
- MRHINSFPGPHYFPCEVCGIAFLKNEVCLKHIAIKHPVPVTAQPLNQPFTCSKCGSRFSSEEYMQVHSVEVHGDFVSSAEPDPKYCCQLCGKEFLSVEGLHYHEQNQHKDTADKPKRKRKATNNDAQKLDGPASMILVCKICSASLDSKSALQSHLKTHNVKKNMELKTGVYQCLICPRSFSSSDGLKYHLATHTGERRYGCSQCDRRFIKKTHLSEHLATHSNVKYFTCERCPRTFSTHSAYKKHIKMFPGPHNFFCAKCGKVFMKESMLEKHLCVDLVAIALAPEVVAQLSEDMIEAYMCLAEEADSAERTRPGSMSCYKCFKIFSSEAELQEHQHEHLGKQLYQCRFCPENFNRSDLFSAHIVNHLGSTPYMCRQCNRKFISPFTLATHLKNYPGEHSFSCTRCKRWFPSSERLEKHDCILQNSDVFLCACSKQFKEWSEFLEHFGKKPFKCCSCAQEFVTLTPLTRHIQRHTGNRPFACDLCTKAFLTKASLQSHLRIHNKSEAQLACTLCDYQTFYQRRFDFHMSKRHGVEGDNTLCPVCGVLYPNIETMKAHIELDHENAVAIDDTSEGKKSLPTELCNLCGKMLTNKYSLRSHMNSVHCPTKPKSVKEFSCPVCGETFRRLNQLERHGEKHDEPGLRPCSLCDVTCSSRKDLRKHMRKHNTYKPFSCDNCHKRFKVCNITECGQNGSKMTRFVAVSLKYHATICSKLLLRKEQEARATLQVPIYELEPTLMTPVKWTY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -