Mfus002043.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465373.1:18590851-18594311[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.9e-05 0.0038 17.7 0.0 2 23 22 44 21 44 0.93 2 18 0.027 1.7 9.3 2.0 2 23 61 83 60 83 0.93 3 18 0.00037 0.024 15.1 0.4 1 21 85 105 85 110 0.95 4 18 2.8e-05 0.0018 18.6 1.3 1 23 114 136 114 136 0.98 5 18 0.0088 0.56 10.8 0.7 2 23 141 163 140 163 0.94 6 18 4.5e-07 2.9e-05 24.3 2.8 1 23 170 192 170 192 0.99 7 18 0.0031 0.2 12.2 1.1 2 23 198 220 197 220 0.92 8 18 0.00017 0.011 16.2 0.5 2 23 254 276 253 276 0.94 9 18 0.024 1.5 9.4 0.0 1 17 282 298 282 299 0.91 10 18 1 64 4.3 2.1 1 22 409 430 409 430 0.91 11 18 0.029 1.8 9.2 0.0 2 20 436 454 435 456 0.93 12 18 0.26 17 6.1 0.1 1 23 503 526 503 526 0.93 13 18 0.00033 0.021 15.3 0.7 1 23 530 552 530 552 0.95 14 18 0.00041 0.026 15.0 0.1 3 23 558 578 557 578 0.97 15 18 1.5e-05 0.00099 19.5 0.4 1 23 584 606 584 606 0.98 16 18 9.8e-07 6.3e-05 23.2 0.6 2 23 613 635 612 635 0.96 17 18 0.0018 0.12 13.0 4.9 1 23 668 691 668 691 0.96 18 18 0.012 0.78 10.4 0.2 2 23 699 721 698 721 0.94
Sequence Information
- Coding Sequence
- atggaagaaaacgAAGTTGGAATAACTTACGACTTTCCAGAAGTTTCAGAGCAAGGTGAAACAACGTGTGATGATTGTGGGGCGTCATTTAATGACGCATCAGACCTCGCGGTTCATCGGTTTGTTGATCATGGAGCAGCTGAGCGACCGAAAACTAAAGAAGGGTCAGTCGGGTTGATTCACTGCCACGATTGTGAGCAAGTATTTGAGGAACGCACTGCTCTTAGCTTACATCGACAGGAAAAGCATTTGTTTCGATGCAAGGACTGTAATGACTCATTTCCTAGCAGCGCCCATCTCGCACAGCATACCCGCGAAATGGGACCCCATAAAGCTCAGTTCGAATGCACGGATTGCGGCTCCAGCTATGATGATAAAACCAAATTGAGAATTCACCGTAGGCGACACCAAAATAAGCTTCAGTGTGACATATGCTTGCAGTACTTTTCGAAATCCCAAGCTCTGAAATCTCACAAACTTGTCAAACACGACGCGTCGCCTCAATCGTTCAAATGTAAAATTTGCAAAAAGGCGTTTCCCTACTCGACCAGCCTACGTTACCACATGCGAACCCATGGTGATAAACTTATCACCTGTGAAATTTGCGGTCTCAAATTTCATTTCGCATTTAACTATAAGCGGCACGTGGAGCTGAACCATGGGCGACCTGAGGACAAAGTGGTGTGTGAGCATTGCGGAGGCCTCTACTCCAAACTCAAGATGAGGGACCATTTGGCGCGCCACGGCGACGCGACCATACCCTGCGACCTTTGCGGCAAAATGTTTCGAGTCAAGGAGCTAATGCGAAGACACAAGATCAAGTTCCATAAAGAGAAACTTCCTCATGCCTGTCCCATGTGTTCAAGAAGCTTTGTCAAAGCAGAAAATCTAGAAGAAGAATTAGGAACGAATAAATCCACTATATCAGAAACAGTGCAACTCGCGAAAGAAACGGAAGAGGAAAGAACTGAGACGGCGGAGCACACCGCCAGTTGTGTAAAGGGAGAACAAGACTGCGATAAATCGGTAGAGACATCCGAAGAGAAACTTATCTGCCCCACGTGTGGCTGGGCTGCTGAAAGCCCCAAAGAATTTGAGTGCCATGTCTGTCATAGCGTTACAGTCAAACTGGAGGAGACAAGCCCTACGGATAACCCCGCGACTTCTTCAGAAGATGGCTCGCTTTGGCCTTCTTTGGAAGGAGATGCAAGTCGGAATGACAAATATTACTGTTGGGAGTGCCATGTAGACTTTGATACGCGACAGCTCTACGATGAGCACACGTGCACCAGTCCAGAGTCCATCATGTGTGAGGTATGCTTCCAATCTTTCCAGACCAACGCAGAACTTGAAGACCACGTCGCTGAAGGAAGTATCTGCCGAGCGTCCCGTCCATCAACCGGCGGCATTCTGCGAAATTGGCTGGAAAAACCAACATGCACGGGCCAAGATGAAGAACAACCAGAATTTGTTCCTCTCAACGAAGAGTCTACGCCgatgaaaaaatattactgCGAGCTGTGCAATAAACCTCTATTGGGCAAGGTGGCGCTAGACAAGCATATGAAAGCGGAGCACGCCAAGGTTTTCAACTGTGAGTTGTGCGGGAAAAGCTTCCGGACGCCTCGGCGGATCCGTGAGCACCGTATCCTGCACCAGGGCAAGGCGCCCTGCACCGTCTGCGGCAAGGTCTACGCGGGCCGTGCCAGACTGCGGGACCACATGACCAAGCACACGGGTGACCGCCCTTTCGAATGTACTATTTGCAGCAACAAGTTCCCGTACGCATCTAGCCTTGTCAAGCACATGAAAATTCATACCCAACAAAATCAGATCGTATGTAAGGTATGCGGTAAAAACTTCACATTCTCTAGTAACTACCTTCGCCATATGGATACGGAACACGGAGGGCCAGAAAACAACGTCGTCTGCCATTTTTGTGGGGATCTCGTACACAAGCGGCATATCAAACCACACCTGATGAAGCACGGAGAAGCCACCTTCACATGCGACGTCTGTAAAAAGAAGTTCCATCTTAGGGAGCAGCTGAGAAGACATAGGTACAAAGTTCACAAGGACGAGGTTCCCTGCTTAAAATGCAACATCTGTGACGTGGCCTATGGCACCGCTCTGCGGCTCCAAAAGCACCTCAAAGCCAAACATTCCATTACCCCTACCTCAACTTGTAGTGAGGGCTCACTTGTATGTTGA
- Protein Sequence
- MEENEVGITYDFPEVSEQGETTCDDCGASFNDASDLAVHRFVDHGAAERPKTKEGSVGLIHCHDCEQVFEERTALSLHRQEKHLFRCKDCNDSFPSSAHLAQHTREMGPHKAQFECTDCGSSYDDKTKLRIHRRRHQNKLQCDICLQYFSKSQALKSHKLVKHDASPQSFKCKICKKAFPYSTSLRYHMRTHGDKLITCEICGLKFHFAFNYKRHVELNHGRPEDKVVCEHCGGLYSKLKMRDHLARHGDATIPCDLCGKMFRVKELMRRHKIKFHKEKLPHACPMCSRSFVKAENLEEELGTNKSTISETVQLAKETEEERTETAEHTASCVKGEQDCDKSVETSEEKLICPTCGWAAESPKEFECHVCHSVTVKLEETSPTDNPATSSEDGSLWPSLEGDASRNDKYYCWECHVDFDTRQLYDEHTCTSPESIMCEVCFQSFQTNAELEDHVAEGSICRASRPSTGGILRNWLEKPTCTGQDEEQPEFVPLNEESTPMKKYYCELCNKPLLGKVALDKHMKAEHAKVFNCELCGKSFRTPRRIREHRILHQGKAPCTVCGKVYAGRARLRDHMTKHTGDRPFECTICSNKFPYASSLVKHMKIHTQQNQIVCKVCGKNFTFSSNYLRHMDTEHGGPENNVVCHFCGDLVHKRHIKPHLMKHGEATFTCDVCKKKFHLREQLRRHRYKVHKDEVPCLKCNICDVAYGTALRLQKHLKAKHSITPTSTCSEGSLVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -