Mfus016609.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465381.1:7290628-7293829[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 0.68 10.5 0.2 3 23 269 289 267 289 0.97 2 12 7.7e-05 0.0049 17.3 4.3 1 23 312 334 312 334 0.97 3 12 2.3e-05 0.0015 18.9 0.1 1 23 360 383 360 383 0.96 4 12 0.00018 0.012 16.1 5.2 1 23 419 441 419 441 0.98 5 12 2.2e-05 0.0014 19.0 0.2 1 23 447 469 447 469 0.96 6 12 2.9e-05 0.0018 18.6 0.2 1 23 475 497 475 497 0.98 7 12 0.0073 0.46 11.1 0.6 1 23 503 525 503 525 0.96 8 12 4.3e-06 0.00028 21.2 0.1 1 23 531 553 531 553 0.96 9 12 0.00025 0.016 15.7 0.1 2 23 557 579 556 579 0.96 10 12 5.1e-05 0.0033 17.8 3.0 3 23 590 610 589 610 0.97 11 12 3.3e-06 0.00021 21.6 0.3 1 23 617 639 617 639 0.98 12 12 2.1e-05 0.0013 19.0 2.8 1 23 645 668 645 668 0.97
Sequence Information
- Coding Sequence
- ATGGAAATTAGCTCAAAGTGGAGACTAAAATTAGAGAAGTTGCTTGAAGCAAAGGGATTTATGAGTGCGGTAACAAACCCTGAACCAACGTCAGAAACATTTCAAGAATACGACGATTTGGCGAAGACTATTGTCCTCAATTGCATACCCGTTCAACACCTGGACTATATTCAAGGGAAAAGTACTGCTAAAGAAATGATTGATGCTATAGAAAGTGCGGTGCAAAGGAAAAAAGTCATGCAAAAGTTATTCCACTGGAAAAGGCTGGTATCACTAAAATATGATGGGACAAACAAACTTGAAGAGCATTTTGATGCTTTTGAGAGTATTATCGTAGAACTGGACAAAGCTTCAAACAGTAAAATCATGGGAGAAGACGATAAAGTGTGTCATTTACTGATGACACTCCCGCCGCACTTTGATGAAGTTCCCACTATGCTCAAAACACTAACCGCTGGAGTGATAACCACTGATTTAGTAAAGGCGATATTGCTTGATTTCGAAGTGAAGAAGGGGTCCGTTACTGCTACGAATACTTTTAAAGTGGAGGAGCCACTCTCTACTGCGATTTTTGAAGAAGGTGGTCATTTCATGGCTCAATCATCTCAGTGGAATGCTGTAGAAGTGAAGGTAGAGTACGTGGAACCAGATGAACAGGCGGAAGGGCAGCCTTCCTCGCCGAGGAATCAGTCAAGCATGGATGGCGGATGGGAGGACGATGAGCTGATGCATGTTAAAGAAGAggtagaaagtaaaaaacctgtgGTAAAACGATTAAGAGACGCTTCTGAAAAGTCGGTCATTTGTGAGATATGCGAGAAACCCCTGAAATCAAGGGCAGGATTGCGATTTCATATGAAAAGGCACAGGGGACAGCTTGATTTTGAGGAGTTGCTTCGAAACCCTCCAGTTAAGAGGAACGGCACCAAGCAGCATTCTTGCAAAATATGTAAAAAGAACTTCAAGTCAAACCAGTGGCTAAAAATACATTGGAAGAAACATGTGAAAAGAGGAGAGACACAAGTGGTTCCTGGCGAAGTCTTGGATAAAGTTAAAATGCAAACGATCAAAGTCAAATTCCCTTGTGGTCTGTGCCCCAAAGTTTTCATAACCAGTGAAGGCCTCAGCAAGCATATCATGAACAGGCACACATGGGAACCCGCATTAACAGAAGATCCTGAGCCTCCTCAGTCAGCGGAACCTTCAGAAACCGCTCAATCAGAAAAGAAACCCTCCACCTCCAACAAAAAGGAATTCCATTGTAATATCTGTAAAAAGGTCCTAAGATCAAACCACAGCTTACGCCAGCACTTGAAGGTTCACAACATTATCAAATCCTACTTATGCGATTTTTGCGGCAAGGGATTCAATATAAAAAATGCCCTAACCATACACATGAGGGTTCACACTGGCGAGCGGCCGTACACTTGCGAAATCTGCGGAAGAACGTACATTTCGATGGGTCTGCTTAACGTTCACAAAAAGGTACACACCGGCATAAGGCCTTATTTATGTACGATATGCGGGAAAGGCTGGCATTCGAGAAGGGATCTTGGTGTTCATATGCGAAGTCACACTGGTGAGAGACCTTATTTATGCAACATCTGCGGCAAAGGATTTACCGTTAAGGGGCCGCTTAATGTTCACATGAGGCTTCACCAACCGATCCCCTGCAGCGTTTGTGGGTTAACCTTCCCGAACAAGCAGCAGCTCAAACCGCACATAAAAATGATGCACCCAAATATGGCAGTTAAACCGCGTCCGATATGTAGTTTCTGCGGGAAATCATTTAAGAAAACAAACCACCTGACGAACCATTTGCTTGTTCACAGCGACAATAAGCCAATGTACCCATGTGGCTTTTGTGATAAGTCGTACACGACCAAACCTAATCTTGAGATCCATGTCAAATCTCACACGGGTGAAAATCTTTTCTCGTGTGAAGTCTGTGACAAGAGTTTTGCGAGGAAGTTTTGTCTGAAGGAACATGTTATGAGATCGCATGTACTGGAAAATCCTCCACCTCGGAGGAAAAAGAACCGCGGTACGGGGCTAAGAAAAGCTCCTATAGCTTTTGGATACAATTTCTCTCAAATGCCGGTTGCTCACGATTTCTTTTATCAGGATGGAAGAAACTGA
- Protein Sequence
- MEISSKWRLKLEKLLEAKGFMSAVTNPEPTSETFQEYDDLAKTIVLNCIPVQHLDYIQGKSTAKEMIDAIESAVQRKKVMQKLFHWKRLVSLKYDGTNKLEEHFDAFESIIVELDKASNSKIMGEDDKVCHLLMTLPPHFDEVPTMLKTLTAGVITTDLVKAILLDFEVKKGSVTATNTFKVEEPLSTAIFEEGGHFMAQSSQWNAVEVKVEYVEPDEQAEGQPSSPRNQSSMDGGWEDDELMHVKEEVESKKPVVKRLRDASEKSVICEICEKPLKSRAGLRFHMKRHRGQLDFEELLRNPPVKRNGTKQHSCKICKKNFKSNQWLKIHWKKHVKRGETQVVPGEVLDKVKMQTIKVKFPCGLCPKVFITSEGLSKHIMNRHTWEPALTEDPEPPQSAEPSETAQSEKKPSTSNKKEFHCNICKKVLRSNHSLRQHLKVHNIIKSYLCDFCGKGFNIKNALTIHMRVHTGERPYTCEICGRTYISMGLLNVHKKVHTGIRPYLCTICGKGWHSRRDLGVHMRSHTGERPYLCNICGKGFTVKGPLNVHMRLHQPIPCSVCGLTFPNKQQLKPHIKMMHPNMAVKPRPICSFCGKSFKKTNHLTNHLLVHSDNKPMYPCGFCDKSYTTKPNLEIHVKSHTGENLFSCEVCDKSFARKFCLKEHVMRSHVLENPPPRRKKNRGTGLRKAPIAFGYNFSQMPVAHDFFYQDGRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -