Mfus000096.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465373.1:683367-686603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0058 0.37 11.4 0.1 3 20 46 63 44 65 0.92 2 22 0.0095 0.61 10.7 1.1 2 23 188 210 187 210 0.96 3 22 0.00035 0.023 15.2 1.6 3 23 215 235 214 235 0.97 4 22 0.0087 0.56 10.8 0.2 3 23 242 262 240 262 0.92 5 22 7.1e-07 4.6e-05 23.7 0.1 1 23 270 292 270 292 0.97 6 22 0.13 8.3 7.1 0.1 1 23 298 321 298 321 0.93 7 22 0.00014 0.0088 16.5 4.5 1 23 330 352 330 352 0.97 8 22 3.1e-05 0.002 18.5 1.0 1 20 358 377 358 379 0.97 9 22 0.011 0.72 10.5 0.9 2 23 427 451 426 451 0.94 10 22 1e-05 0.00064 20.1 0.6 1 23 457 479 457 479 0.98 11 22 1.1e-05 0.00073 19.9 2.5 1 23 484 506 484 506 0.98 12 22 4.1e-06 0.00026 21.3 1.1 1 23 512 535 512 535 0.98 13 22 1.3 83 4.0 0.0 2 23 574 596 573 596 0.92 14 22 0.0043 0.27 11.8 4.8 3 23 669 690 667 690 0.93 15 22 0.0034 0.22 12.1 0.4 2 23 696 717 695 717 0.96 16 22 0.021 1.3 9.6 1.2 2 23 737 759 736 759 0.95 17 22 0.019 1.2 9.7 1.5 1 23 764 786 764 786 0.97 18 22 0.013 0.8 10.3 2.8 1 20 791 810 791 813 0.94 19 22 2.6e-05 0.0017 18.8 2.7 1 23 819 841 819 841 0.98 20 22 0.018 1.2 9.8 0.8 1 23 846 869 846 869 0.97 21 22 0.0003 0.019 15.4 0.1 1 23 883 905 883 905 0.99 22 22 0.055 3.5 8.3 5.0 1 23 911 933 911 933 0.99
Sequence Information
- Coding Sequence
- ATGCGACACTCGCCCAGTGTTGGGAAAAACTTAGAACGTGTGACTTATGGTGAAGCTCGAGTGAAGGAGCTCAAGGCAGCCATATTCAAGGGTAGGAAGAGACCCGTAACAGGAATGACGAAGGATGCAGTTATTTGCCACCATTGCGGCGTTGGGTTCGCCAGTCAGAGAGCTGTTCAAAAACATGTTGAGCGAGTGGAAGCCAAGAGTTTCGCGGCAAAAGTTCGAACCCCCATTGACAGTAACATCGAAGCTCTCAGCTATTTACCTTTAAATGAAATCAAAGCTGCCTTTTACGGAGGAAAGGGTGCCAACGCGAGGGTTGTGAAGAGTGTGCTAACCGACACAGCAAGTGCGTCCGGCAACTTGCCAATGCGTATTATCGCAGAATATGCGCATCCCAACAAGGATACGACCGATCACTGCTACTTTCGTGGCTGCTATAAACCGCCTCAGGAGGGCCCGAAACCTCCAATATGCGAAGAATTCCAGGTCCCACCCGCTAGAGGAACGACCATCGTATTGCCCACCAGAGTTTTGAATATTCCtcttgaaaatttgaagtgCAATTTTTGTGAGTGTGTTTTCGCTATTCGTGCTTCACTAGAGGAGCACGTTCGCAGGAAACACACCCCGTTGCTCTGCCACGTCTGTGGGAAAGAATTCCAGAAGCGCAGCTCTCTGCGTGAGCATGAGATCAGTCACAAGCCCGCGCAGTTCCTCTGTGTTGCCTGCCCGTCAGTATTCAAAACTGCAGCAGCTCTCAACCGACATAGGTTCACGCACCGTGAGCTGTGTTCGCAGCGTTTCATATGTGaggtctgtggaaagagctttgtGCGCCGTGGTACTCTCAAGGTCCACCAGATAATCCACATGCCTGTGCCGGCTTTTAAGTGTAAGACTTGCGGCCGACTGATGAAGTCTATGCCAAACTTAGTCGCTCACGAAGAGATGGTGCATAAGATTGTACGCGGTGTCAAGCCCCATTCCTGTGATGTGTGTCACAAGTCCTTTAAGAAGCTGTCCAGTTATGAGGCGCATCAGCAGCTCCACAAAGGCAATTTACCCTACAAATGCTCCAAATGCCACAAGTCATTTGTATCCAACAAGGGGCTCAACATACACATTGGATACAACAGATGTGATGAGAACATAAGATATTGCTCTACCTGTCGGCGCAGCCTCAAGGCGGACGAGTTTTGCGAACATGtgcccataaaaaaaaatcacagacaATCTAAACAGAAACCGAGCGCCCGCAAGTCCCGCGCAATCTCCTGTCCTCACGCCGGGTGCAAGAGAGTATTCGATTACGAGTGCCAGCTGCGAGTGCACGTTAATGTGATGCACACCTCAAATAGGCCTTTCACATGTGATCAGTGCGGAGCCACGTTCAAGACAAAGGCTGTTTTGTTGAAACACCAGAATATGCACGAAGGTGCTCGCTTCCCCTGCCAGCTCTGCAACAAAGTGTTTCGCCGGAAGGCCTATGTCACGATACATATGCGCCACCACACTGGTGAAAAGCCATACAAGTGTCAATTATGTGGCCGAGGCTTTACTCAAAAGGGGGACATGCAGAAACATGTGAAAAAATTGCACGGGCGTAGCTCCTCCGCGGGCGTTGAAAGCAAAGGGATGGTGCGTGTTAAAGCGGAAGACGACAGTTCGATGAGTAGCTTGAACGAGACGGTAGGGGGCGAGGACAGTGTGTGCCGATGTGGGGCGTGTGGTGCCGAGGCCGTTAACTACTCCGCCCTCCAGGACCACGTCAAGGCCGCTCACCCCAACGACTGCATGGAGTGCAAACTCTGTGGGGACATCGTCCTCAAACTTAACTTCCCTGACCACGTCAAGCATGTTCACGGCTTCGACCTTCGTGGAGAGCGCCCTAGGGGCAAGTCAAAGATGGGTGAAGATGGTGTCCAGGCCCTTTGCAAAGTGGAGCTCGGGGACGCTGACCCGCAGCGCTCTATCGACATCGAGTACAAGGGCATCGACTGCTGCTTCTGCAAGCAGAGCTACTCCAACGAGCACAACCTCAAGAAGCACATGTACAATGTCCACCGCATGCAGCGAGTTCGTTGTGATGTGTGTGATAAGGAAGTCAACAAGAAGTCGCTCGATAGACACATGAAGAGTGTGCACAGTGCTCGCGTCGCCTGCAAACGTGAGCGTCGAACTGTTCCCGatgaccaaaaaattccctgcTACCTGTGCCCCAAGAAATGCGTCAGCCTTATGTCCCTTCACGCTCACATTAAAAACATTCACGAGGCGGAACAGTTCAAATGCTCGCAGTGCGAGTTCAGCGGGACGAAACGCGGCCTCGAGCGCCACATGAAGAAGGAGCACAACGAGGAGGTGTTTCAGTGCACGTGCTGCAACAAGGTGCTCAAGTCAAAAAGCACACTCAAAGAACATATGTGGATCCACACTGACCATCGTCGCTTCATTTGTGACATTTGCGGCATGCGCTTTAAACGGACCAGCAACTACCATGGCCACATGAAGAGTCACCAGGAGAAGAAGTTCCAGTGCCAGTTGTGCGGGAACTTCTTCCTACGGAAACGTTACCTGGCCGTGCACGAGCAGACTATACACGACTTTTACGGGAAGGGCGTGGCTCCACAGGAGAAGGGCTACCAGTGCGAGGTGTGTGGCGTTAAGCTCAAGTGGAAGAACAACCTGATGGCGCACATGCGGATTCACACGGGGGAGAAGCCGTACAAGTGCAAGATCTGCGGAGACGACTTCACGTGCCACGGCTCCCTGCGCACCCACATGTCCAAGCACGCTGTGAACCCTGCTCCCTGCCCCGAGTCGACAGTGCTGATTCAGAGTGGGTACCTGCCGCCCGGAGCGTCCGTGTCTGCCTTCCCTGTTCCGCCGCCGCCGTGA
- Protein Sequence
- MRHSPSVGKNLERVTYGEARVKELKAAIFKGRKRPVTGMTKDAVICHHCGVGFASQRAVQKHVERVEAKSFAAKVRTPIDSNIEALSYLPLNEIKAAFYGGKGANARVVKSVLTDTASASGNLPMRIIAEYAHPNKDTTDHCYFRGCYKPPQEGPKPPICEEFQVPPARGTTIVLPTRVLNIPLENLKCNFCECVFAIRASLEEHVRRKHTPLLCHVCGKEFQKRSSLREHEISHKPAQFLCVACPSVFKTAAALNRHRFTHRELCSQRFICEVCGKSFVRRGTLKVHQIIHMPVPAFKCKTCGRLMKSMPNLVAHEEMVHKIVRGVKPHSCDVCHKSFKKLSSYEAHQQLHKGNLPYKCSKCHKSFVSNKGLNIHIGYNRCDENIRYCSTCRRSLKADEFCEHVPIKKNHRQSKQKPSARKSRAISCPHAGCKRVFDYECQLRVHVNVMHTSNRPFTCDQCGATFKTKAVLLKHQNMHEGARFPCQLCNKVFRRKAYVTIHMRHHTGEKPYKCQLCGRGFTQKGDMQKHVKKLHGRSSSAGVESKGMVRVKAEDDSSMSSLNETVGGEDSVCRCGACGAEAVNYSALQDHVKAAHPNDCMECKLCGDIVLKLNFPDHVKHVHGFDLRGERPRGKSKMGEDGVQALCKVELGDADPQRSIDIEYKGIDCCFCKQSYSNEHNLKKHMYNVHRMQRVRCDVCDKEVNKKSLDRHMKSVHSARVACKRERRTVPDDQKIPCYLCPKKCVSLMSLHAHIKNIHEAEQFKCSQCEFSGTKRGLERHMKKEHNEEVFQCTCCNKVLKSKSTLKEHMWIHTDHRRFICDICGMRFKRTSNYHGHMKSHQEKKFQCQLCGNFFLRKRYLAVHEQTIHDFYGKGVAPQEKGYQCEVCGVKLKWKNNLMAHMRIHTGEKPYKCKICGDDFTCHGSLRTHMSKHAVNPAPCPESTVLIQSGYLPPGASVSAFPVPPPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -