Basic Information

Insect: Mesopsocus fuscifrons
Gene Symbol: -
Assembly: GCA_950004255.1
Location: OX465380.1:13796419-13801593[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.2e-05 0.00078 19.8 2.1 1 23 136 159 136 159 0.95

2 16 6.7e-05 0.0043 17.5 0.3 2 23 166 187 165 187 0.97

3 16 3.4e-05 0.0022 18.4 0.5 1 23 193 215 193 215 0.98

4 16 1e-05 0.00067 20.0 2.9 1 23 222 244 222 244 0.99

5 16 0.004 0.25 11.9 5.8 1 23 250 272 250 272 0.99

6 16 0.11 6.9 7.4 0.3 1 13 278 290 278 291 0.92

7 16 1.8e-05 0.0011 19.3 0.4 1 23 352 374 352 374 0.98

8 16 0.00016 0.01 16.3 0.9 1 23 378 400 378 400 0.95

9 16 1.9e-05 0.0012 19.2 0.4 1 23 406 428 406 428 0.98

10 16 2.9e-06 0.00019 21.7 0.3 1 23 434 456 434 456 0.98

11 16 5.1e-07 3.3e-05 24.1 0.4 1 23 462 484 462 484 0.98

12 16 2.1e-05 0.0013 19.1 0.7 1 23 490 512 490 512 0.97

13 16 0.017 1.1 9.9 1.7 1 23 518 541 518 541 0.81

14 16 1.4e-06 8.7e-05 22.8 2.3 1 23 547 569 547 569 0.98

15 16 0.0095 0.61 10.7 7.0 1 23 575 597 575 597 0.99

16 16 0.00033 0.021 15.3 5.8 1 23 603 625 603 625 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.2e-05	0.00078	19.8	2.1	1	23	136	159	136	159	0.95
2	16	6.7e-05	0.0043	17.5	0.3	2	23	166	187	165	187	0.97
3	16	3.4e-05	0.0022	18.4	0.5	1	23	193	215	193	215	0.98
4	16	1e-05	0.00067	20.0	2.9	1	23	222	244	222	244	0.99
5	16	0.004	0.25	11.9	5.8	1	23	250	272	250	272	0.99
6	16	0.11	6.9	7.4	0.3	1	13	278	290	278	291	0.92
7	16	1.8e-05	0.0011	19.3	0.4	1	23	352	374	352	374	0.98
8	16	0.00016	0.01	16.3	0.9	1	23	378	400	378	400	0.95
9	16	1.9e-05	0.0012	19.2	0.4	1	23	406	428	406	428	0.98
10	16	2.9e-06	0.00019	21.7	0.3	1	23	434	456	434	456	0.98
11	16	5.1e-07	3.3e-05	24.1	0.4	1	23	462	484	462	484	0.98
12	16	2.1e-05	0.0013	19.1	0.7	1	23	490	512	490	512	0.97
13	16	0.017	1.1	9.9	1.7	1	23	518	541	518	541	0.81
14	16	1.4e-06	8.7e-05	22.8	2.3	1	23	547	569	547	569	0.98
15	16	0.0095	0.61	10.7	7.0	1	23	575	597	575	597	0.99
16	16	0.00033	0.021	15.3	5.8	1	23	603	625	603	625	0.97

Sequence Information

Coding Sequence: ATGGATTGCGATGAGGGAAACGTCAATGTAGATATAAAGCTAGAGCAACCAGACGGGGAGCCTTTGTCAAGGTACCCAGTGGAACAGCAGCAACTTCAACTGGACGAGCCATCGTCCAGCTACCTTAGCGTCTCAGTCAAACAGGAGCCACTCGAACATGACGGAGACCCGTCGTCAAGCTACCTTAACATCGCAGTGAAACAGGAGGCAGCGGAAGTAAACTACGTGAAGACGGAGTACGAAGACCAGCAATACATCCTATCAGATAGTGAATTAAAGCAGGAGGGTCTATGGGGGAGATACATACACCCGTCAGATGCCTCGCCACCTCCAGAAAGGCAGAGGGAAGGTATCACGTCCTCACAAGAAATGCAGTCGCAGAGTAGGGGTGCCGGAGAAGGGTCATTCTCGTGCAATGAATGCGGGATGAGGTTTCGTTTTAAAAATACTCTTCAACGTCACTTAATGGAAAAGCATTTGCAACGCATATTCCTCCCTTGTAAAATATGTGGCAAGCGATATTTTTCTAGAAGTGGGTATGCGAGTCATCTTCTGACACATACCGGAGAAAAACCTTTTCCTTGTAAGCATTGTGGTACGGGTTTTATGTCAAGAGCAGCGCTTGCTGAACACATGACAAAGCACACGGGTGATGAAAAGCTTTTTCAGTGTAATCAATGTGATAAACGCTTTTCCACCAGAGGTTCTCGCACCAACCACACCAGGATCCACTCAAATAATAGAGGTTACTATTGCGGAGTTTGCGGTAAACATTTcttgaaaaattgttttctgaGGGATCACATGCGGACCCACACTGGCGAAAGACCTTACCAATGTTTACTATGTGAGAAACGGTTTAAGTCGAATGACATTGACTGCACTAGGAGGGAGTTCAATGACCAAGCTGTGATCCAGTCAGGGAGTGAAGGAAAGCAAGGCGGTTCAGTGGAGACGAACTCACTAAAGGAATTTATTACCGAAGTAGACTGTTCGAAGAAGGATCCTCAGAAATCCTACAAAAGGCTAGGACAACACACCGATGACCAGTCGTTTCCTTGCAGCGTCTGCGGGCAGAGGTTTCGCCGCAGGCAAGGCGTTTTGCGACACATGATATCCCACACCGGCAAATTTCTCTGCAGGACATgcgggaaaatttttgttgaaaaaaacgATCTCAGTATTCATAGGAAAACTCATATCGGTAAAAACAAATTCTCGTGTGACGAGTGTGGCAAACAGTACCAAATGAAAAGCGTCCTTACTGTCCATATGAGAattcatactggggagaaacctTTTGTATGTAAGGGCTGTGGGAAAGGCTACATTTCAAAAGGGGACTACAATCGTCATCTAATGAGCCACACGggggaaaaaccttttgaatGTAAGGACTGTGGCAAGCGCTTTGCCGCGAAAAGTGGTCTCAACTATCATATGAGAGCTCATGCAGGCCAAAGGCCATTTTCTTGTGATGTGTGCGGTAGGAAGTTTATTCATAAAGGCGCGCTGAATGATCACTCGAGGGCCCACACTGGCGAAAGACCGTACAAATGCACCGACTGCGGGAAAGCTtatagtttaaaaaatatccttaACTGTCATATAATGAGAAGTCATACAGGCGAAAAACCTTTCAAGTGTAAGAATTGTACTAAGCAGTTTACTTCTAAAAGTGATCTAAATATCCACGAGAGGATTCATACGGGTGAAAGACCATTCCAGTGTAGAGACTGTAGTAAGCAGTTTACTTGTAACAAATATCTCAAATACCACATCAAGACACATTCTCGTGACAGGCCGTTCGCGTGTGATCACTGTCGGCAAAAGTTTAGCCTCAAACACAGCCTACAACGCCATTTGAAGGTTCATAAGGAAGAAAATTCGTAA
Protein Sequence: MDCDEGNVNVDIKLEQPDGEPLSRYPVEQQQLQLDEPSSSYLSVSVKQEPLEHDGDPSSSYLNIAVKQEAAEVNYVKTEYEDQQYILSDSELKQEGLWGRYIHPSDASPPPERQREGITSSQEMQSQSRGAGEGSFSCNECGMRFRFKNTLQRHLMEKHLQRIFLPCKICGKRYFSRSGYASHLLTHTGEKPFPCKHCGTGFMSRAALAEHMTKHTGDEKLFQCNQCDKRFSTRGSRTNHTRIHSNNRGYYCGVCGKHFLKNCFLRDHMRTHTGERPYQCLLCEKRFKSNDIDCTRREFNDQAVIQSGSEGKQGGSVETNSLKEFITEVDCSKKDPQKSYKRLGQHTDDQSFPCSVCGQRFRRRQGVLRHMISHTGKFLCRTCGKIFVEKNDLSIHRKTHIGKNKFSCDECGKQYQMKSVLTVHMRIHTGEKPFVCKGCGKGYISKGDYNRHLMSHTGEKPFECKDCGKRFAAKSGLNYHMRAHAGQRPFSCDVCGRKFIHKGALNDHSRAHTGERPYKCTDCGKAYSLKNILNCHIMRSHTGEKPFKCKNCTKQFTSKSDLNIHERIHTGERPFQCRDCSKQFTCNKYLKYHIKTHSRDRPFACDHCRQKFSLKHSLQRHLKVHKEENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -