Mfus000089.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465373.1:657298-662272[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.3 2.1e+02 2.7 2.7 6 23 183 200 181 200 0.87 2 19 0.00047 0.03 14.8 1.8 1 23 209 231 209 231 0.96 3 19 0.0027 0.17 12.4 0.5 1 23 250 272 250 272 0.98 4 19 0.18 12 6.7 0.4 2 23 284 304 283 304 0.92 5 19 8.3e-06 0.00053 20.3 0.1 1 23 310 333 310 333 0.96 6 19 4.3e-05 0.0028 18.1 0.1 1 23 339 361 339 361 0.98 7 19 0.0069 0.44 11.1 8.6 1 23 367 389 367 390 0.96 8 19 3e-05 0.0019 18.6 0.8 2 23 398 420 398 420 0.96 9 19 0.00022 0.014 15.8 0.7 1 23 426 448 426 448 0.99 10 19 3.7e-07 2.4e-05 24.6 0.2 2 23 455 476 455 476 0.97 11 19 2.5e-05 0.0016 18.8 1.1 2 23 482 503 481 503 0.96 12 19 0.039 2.5 8.8 0.2 3 23 511 531 510 531 0.91 13 19 6.3e-06 0.0004 20.7 2.0 1 23 555 577 555 577 0.98 14 19 0.00014 0.0087 16.5 0.3 2 23 583 605 582 605 0.96 15 19 0.13 8.6 7.1 2.2 2 23 612 633 611 633 0.94 16 19 3.6e-05 0.0023 18.3 0.3 3 23 641 661 639 661 0.98 17 19 0.0038 0.24 12.0 1.6 2 23 668 689 667 689 0.97 18 19 3.4e-07 2.2e-05 24.7 0.9 1 23 694 716 694 716 0.98 19 19 8.3e-05 0.0053 17.2 0.1 1 23 722 744 722 744 0.99
Sequence Information
- Coding Sequence
- ATGTCTTCAAAACGGAAAAAAGTGGAAGAATGTATAGTGAAGGAAGAAGAAGCTGGCTCCAAATATTGCAGAACGTGCGCTGGTCGTAACGGTCCTACAGTTCCTATATTTCCCGCTGCAAACTCCAACAGTATAcgttttcaagaaattattgaaaagtaTCTGCCTATCAAGgtaacGATGGAAGACTTGCTACCTCTTGAGCTGTGTGGGAAGTGTGCACAAACTTTGTCAGCGTTTGAAGAGCTGGCTGAAGGAGTTCTCCGTGCCGAAACCAGACTCAAACACTTGCTGGCAGAAACTTCAGAAGACTTGGGCAAAACAGAGgtgGATGCCAACTTGAACGACGGAGCCTCCGATAGCGATGATCTTCCTCTTAGTACAAAAATAGCCAACATCACTAAGaaaaagaaaggaCGAACGAAAGTGAAGGAACGTACTGCTGCTGAGCAAGCTGACAACGTAAAGTCTGCTAAAAAGATGGCAGCACTCAACCAAAAGGCGCAGTGTAGCGACGTTGACATGGCACATGAAGTAAAACAGCTGTGTCTGTTATGTCTTAAATCCGTCCGCCACCtggaaaaacatttaaaaaagcATGTCCCTACCTATAAAATGGAAATCCACTTCTGCTCAATATGCGGAGAACCGTTAAAAGACTCAGAAGAACTCTGCAGACATGTCTACACCCACTCCGGACTGACTAGCAGACGAAACATCAACAGAACAAGCGGTGACAAAAACGGTTTCCAGTGTAGTCTATGCCACACCACATTTCCCGAAGTTATAAACCTTCTAACCCATGCTGCGACACATTTGTCGCCAACTTGCAAACAGCCCGTGTCGCTACATTGTGTCGTGTGCGGGAAAACAGTATTGCGCGGGACGTTACGTCGCCACTTGGCGGCTCACGGTCAACCAAAACGGTTTTACTGCGAGTACTGTGGGCGGGAGTACGCCCAAGAGTCGGGGCTGACTCGCCACGTCCGGGCCGTCCACGAGGGCGTGAGGCGGTACAAGTGCCCGGTGTGCCCTGCTGTGCTTCGAACTAACGACCTCCTGCGTCAACATCAAGATATGCACCCGGATCCCAGACCATTTCAGTGCGATGTTTGCGGAAGAACTTTTCTGTCCCAAAAACATTTGTACCACCATCGGAAGTACCATCACACAGAGACTGGACTCCGTGCTGTGTGCTCCGTGTGTTCCCGTGTGTTCTCCAGCGCCAGTGTCCTGCGCCGCCACCATCGCGTTGTCCATCTGCGTCTGAAGGAGTTTCAGTGCGAAGTCTGCAGCGCACAGCTCAGCACCAAACAATATCTTCAGGAGCATCTGAGGACCCACACAGACGAGCGGACGGAAGTTTGTCCCGTTTGCGGGAAAACTTTCCAAATGGCGGGAAATCTACGCCAGCACATGAAAACTCACTTGGAGCGCTCGCAGGTGTGCGACGTGTGTGGACGCCGCTTTACCCGTCGATGTCAGCTTGTCATTCACATGGGGTCACACAGGGGCGTGGCTCCTCCTCTCTGCCAGATCTGCGGCAAGACTTTCTTACTGAAGTCTGACATGCTAAAACATGCTGCCGAACACCCTCTCGACCCAATCCCTGGGGTCTGCACGGATCACGGTCAAACTGACCCGTCGAACGCACCGCGGGTTTACGTTTGTAACACATGCGGAAAAAGACTAACCAAGCGCTACAATTTCGAACGGCACCTCAAAGTTCACACAGGGGAAACGTTAACGTGCGAGTCGTGCGGCAAACAGTATCGAGGCCGTTCATCTCTAGAAATCCACGTAAAAACCGTTCACGGCCGTTCGAAAGACTTTCTTTGCTGCCTTTGTACGGACGCCTTCTCCAGCCGCACCATTCTGGAGAACCACATGCGAACGCATACCGGCGAACGTCCGTTCGGGTGCGAACAGTGCGGACTTACGTTTCGGACACGTTCGGGACTAACCGGGCATCTTAAGGTTCACGCAACGGACCCACCACTACAGTGTTCAGTTTGTGGATCGCGATTTCGACTGCGGTGCTCATTGCTCGATCATATGGCGCGGCACACGGACAAGCGTTTCCCCTGCACCCAGTGCGGAAAAGCGTTCGCCACACGGCATGACCTGTGGAAACATCAGCAGATTCACCGTACGGATCGCGTCTATCCCTGCCCGTCGTGTGAAGCGAGCTTTACGGTGCGACGATACCTCGTTGTCCATCTTAGAACCCACTCCGTCAAGACTAAATAA
- Protein Sequence
- MSSKRKKVEECIVKEEEAGSKYCRTCAGRNGPTVPIFPAANSNSIRFQEIIEKYLPIKVTMEDLLPLELCGKCAQTLSAFEELAEGVLRAETRLKHLLAETSEDLGKTEVDANLNDGASDSDDLPLSTKIANITKKKKGRTKVKERTAAEQADNVKSAKKMAALNQKAQCSDVDMAHEVKQLCLLCLKSVRHLEKHLKKHVPTYKMEIHFCSICGEPLKDSEELCRHVYTHSGLTSRRNINRTSGDKNGFQCSLCHTTFPEVINLLTHAATHLSPTCKQPVSLHCVVCGKTVLRGTLRRHLAAHGQPKRFYCEYCGREYAQESGLTRHVRAVHEGVRRYKCPVCPAVLRTNDLLRQHQDMHPDPRPFQCDVCGRTFLSQKHLYHHRKYHHTETGLRAVCSVCSRVFSSASVLRRHHRVVHLRLKEFQCEVCSAQLSTKQYLQEHLRTHTDERTEVCPVCGKTFQMAGNLRQHMKTHLERSQVCDVCGRRFTRRCQLVIHMGSHRGVAPPLCQICGKTFLLKSDMLKHAAEHPLDPIPGVCTDHGQTDPSNAPRVYVCNTCGKRLTKRYNFERHLKVHTGETLTCESCGKQYRGRSSLEIHVKTVHGRSKDFLCCLCTDAFSSRTILENHMRTHTGERPFGCEQCGLTFRTRSGLTGHLKVHATDPPLQCSVCGSRFRLRCSLLDHMARHTDKRFPCTQCGKAFATRHDLWKHQQIHRTDRVYPCPSCEASFTVRRYLVVHLRTHSVKTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -