Mfus014449.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465380.1:488614-494382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.5e-05 0.00093 19.6 3.5 1 23 122 144 122 144 0.98 2 18 0.00056 0.036 14.6 0.1 1 23 150 172 150 172 0.97 3 18 0.013 0.85 10.2 0.9 1 12 178 189 178 192 0.92 4 18 0.00021 0.014 15.9 0.7 1 21 258 278 258 279 0.95 5 18 7.9e-07 5.1e-05 23.5 2.0 1 23 295 317 295 317 0.99 6 18 2.1e-06 0.00013 22.2 3.3 1 23 323 345 323 345 0.98 7 18 6.4e-06 0.00041 20.7 2.0 1 23 351 373 351 373 0.98 8 18 0.0017 0.11 13.0 0.2 3 23 381 402 379 402 0.97 9 18 0.0092 0.59 10.7 0.3 1 23 408 431 408 431 0.89 10 18 0.067 4.3 8.0 1.7 1 23 437 459 437 459 0.84 11 18 1.7e-06 0.00011 22.5 4.1 1 23 466 488 466 488 0.99 12 18 0.0057 0.37 11.4 0.8 2 23 495 516 494 516 0.91 13 18 0.00098 0.063 13.8 0.7 1 23 522 544 522 544 0.94 14 18 3.6e-08 2.3e-06 27.8 2.1 1 23 550 572 550 572 0.97 15 18 5.6e-05 0.0036 17.7 0.9 1 23 578 600 578 600 0.97 16 18 3.2e-05 0.0021 18.5 7.2 1 23 606 628 606 628 0.97 17 18 1.5e-05 0.00094 19.5 1.0 1 23 634 656 634 656 0.99 18 18 0.46 30 5.4 1.2 1 21 662 682 662 686 0.88
Sequence Information
- Coding Sequence
- ATGAATGCTGATAAAATTAATATGAAAGAGGAGCTCGCTGAGGAGGTAACAATCACTACCGATTTGAATACAAACCAGCGGGACGATGAAGCGTTGTCTGTAGAGCTTAGTAATTCTGTCAAGGTGGAAACTGGTGAAAATGAAGGATCCGTCAATGCAAATTTGAGGGCTCCAGTCTTGGACAATCAGCCATCTTTTTGTGATCTTAGTCCTGTTGTTAAGGTGGAACTGGATCCTGACTGGGAGAATGAAACTCTTGAAGAACAGCAACCAGCATCCTCCGGGGAGCAGCAACTGGAAGAAGACTACGAATCAGATGACTCCGCCGATATCCAACCAGCAAGCACCTACGTCGACTCGTCGTTTTCGTGTAACCACTGCGGGCAGCGGTTCGGGCAGAAAGCAGGCCTCAAACACCACGTCATGACTCACGCTGCCGACAACCTGTTCCCTTGCGCCGAGTGCGGGCAATTTTTTAACGAGAAAAATCTTTACTTAAACCACATGGCCGTCCACCTTGCTGAGAGGCCATTTCCTTGCAAAGAATGTGGAAAGCGCTTTAAACGTGATGTTCAGGAGGGAAGCGCTGATTTGAAGCCACACGAAGGAGACAATCAGTCATCTGGCATTGACCCCAGCTCTCTTGTCCAGGTTGAGTTGCATGCAGATGGGGTGGATGATCCGCTGGACGCGACCTCACTAATAGGCTATCCTGCTGCGCCACCTGAGCCCTCCGCGAAAGCCACCACAAAGAGACTAAGGAACCCGAAGTTTCAGTGCGAACACTGTGGGCGAAAGTTTGGCTATAGAGCTCACGTTGACCGGCATATGGCGGTGTGCGTGACCAGTCAGACCGTCGCTAAAGATTCGCTGGCGAGACCGTACTCTTGCGCAGAGTGTGGCAAATGTTTCCGACAGAGGGGAAGTATCCAGAGtcacattagaacacataccGGGGAAAGGCCCTTCGTCTGTACTTATTGTGGAAAAACATTTATACAGAAAAGTAACCTCAAGTGTCACGTCAGGATTCATTCCAAGGAAAAACCGTTTCCATGTCCCCAGTGTAGAAAATGCTACATTCGGAAAAGAGATTTGACCGTCCATATGGAATCGCACAtaacggaaaaaaaattcggttgCAAAAAGTGTCGTAAGGCTTATGCGTTTGAAATGAATCTTGTTGCCCATTTGCGTATTGCGCACAAGAGGGTCAAGCTTTTTAAGTGCGAGATTTGTCCAAAACAGTTTACCTTGGATCGTCGGCTTGCTCAGCACGTGCTAGAAACCCATTCGACTATCAAGCCATTCCCTTGCTTGGAGTGCGATAAAACCTTCACCGAGAAAACGATCCTCGACTGTCACATGAAGATCCACACGGCGGACTTGAAGCCTTTCCAGTGCACGGAGTGTCACAAAAGTTTCATCCGGCGGCGAGTTCTGAGGCGTCACATGGAAACTCACAGTGGCAAAAAAACTTTCTTCTGCATAGAGTGCCGAAAAGGTTTCATCTTTGAAAGTAACCTCATCGCCCATATGCATGGCCACCAAACATCAAAACCTTTCCTTTGTACTATTTGTGGCAAACAGTTTACCAATGAAATCCGGTTTCGAGATCACTTGGAAAACCACCCAAGCGAAAAACCGTTTGCTTGTTCCTTATGTTCTAAAACCTTCACCCAGAAAAGCAACTTGAAGAGCCACATGAGAATTCATTCAATCGAAAGACCTTTTGCATGTTCCGAATGTGACAAAAGATTCACTCTCGAAATTCGCctaaaaaatcacataaaaacTCACACAGGTAGCAAGCCGCATTGTTGCCCCGAGTGCGGAAAGTGTTTTCGACTGCGCTCGTACCTGACTTATCACTTGCGAGTGCACACGGGCGAAAAGCCATACACCTGCACCGAGTGCGGGAAGGGCCACGCACAGCAAAGCGCTCTCTCCAGCCACATGCGGACACATACTGGCGAGAGGCCGTTTGCTTGCAGTGGCTGCAATATGACTTATGTATGGAAAAAAGATTTGCATGCACATCATGTGAGGACTGGTCACGGAAATGTTCCTGGCTTGGCGGAAACCACGGAATAA
- Protein Sequence
- MNADKINMKEELAEEVTITTDLNTNQRDDEALSVELSNSVKVETGENEGSVNANLRAPVLDNQPSFCDLSPVVKVELDPDWENETLEEQQPASSGEQQLEEDYESDDSADIQPASTYVDSSFSCNHCGQRFGQKAGLKHHVMTHAADNLFPCAECGQFFNEKNLYLNHMAVHLAERPFPCKECGKRFKRDVQEGSADLKPHEGDNQSSGIDPSSLVQVELHADGVDDPLDATSLIGYPAAPPEPSAKATTKRLRNPKFQCEHCGRKFGYRAHVDRHMAVCVTSQTVAKDSLARPYSCAECGKCFRQRGSIQSHIRTHTGERPFVCTYCGKTFIQKSNLKCHVRIHSKEKPFPCPQCRKCYIRKRDLTVHMESHITEKKFGCKKCRKAYAFEMNLVAHLRIAHKRVKLFKCEICPKQFTLDRRLAQHVLETHSTIKPFPCLECDKTFTEKTILDCHMKIHTADLKPFQCTECHKSFIRRRVLRRHMETHSGKKTFFCIECRKGFIFESNLIAHMHGHQTSKPFLCTICGKQFTNEIRFRDHLENHPSEKPFACSLCSKTFTQKSNLKSHMRIHSIERPFACSECDKRFTLEIRLKNHIKTHTGSKPHCCPECGKCFRLRSYLTYHLRVHTGEKPYTCTECGKGHAQQSALSSHMRTHTGERPFACSGCNMTYVWKKDLHAHHVRTGHGNVPGLAETTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -