Mfus000091.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465373.1:667730-673194[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00015 0.0093 16.4 1.9 1 23 17 39 17 39 0.99 2 29 0.00017 0.011 16.2 3.5 1 23 78 100 78 100 0.98 3 29 0.0037 0.24 12.0 0.9 1 23 144 166 144 166 0.98 4 29 0.0012 0.074 13.6 0.2 2 23 204 225 203 225 0.96 5 29 0.00046 0.029 14.8 0.3 2 23 296 318 295 318 0.95 6 29 1.4e-05 0.0009 19.6 3.1 2 23 325 346 325 346 0.96 7 29 2.2e-05 0.0014 19.0 0.1 1 20 352 371 352 374 0.93 8 29 0.0045 0.29 11.7 4.9 3 23 382 402 380 402 0.98 9 29 0.00017 0.011 16.2 0.6 1 19 408 426 408 430 0.95 10 29 4e-05 0.0026 18.2 0.3 1 23 457 480 457 480 0.96 11 29 3.8e-05 0.0025 18.2 1.4 2 23 487 508 486 508 0.96 12 29 8.4e-05 0.0054 17.2 3.0 1 23 514 536 514 536 0.98 13 29 0.004 0.26 11.9 5.6 1 23 542 564 542 564 0.95 14 29 0.0034 0.22 12.1 1.6 1 23 570 593 570 593 0.90 15 29 0.013 0.83 10.3 1.2 1 19 601 619 601 622 0.93 16 29 0.15 9.7 6.9 1.4 1 23 683 706 683 706 0.92 17 29 0.0007 0.045 14.3 1.7 1 23 714 737 714 737 0.96 18 29 0.00018 0.012 16.1 1.6 2 23 748 770 748 770 0.96 19 29 0.00013 0.0082 16.6 1.1 1 23 776 798 776 798 0.98 20 29 2.7e-06 0.00017 21.9 1.0 1 23 804 826 804 826 0.99 21 29 0.0044 0.28 11.7 0.5 1 23 832 854 832 854 0.96 22 29 0.00054 0.035 14.6 0.1 1 23 860 882 860 882 0.97 23 29 9.7e-05 0.0062 17.0 0.9 1 23 888 911 888 911 0.94 24 29 0.0021 0.14 12.8 0.9 2 23 975 997 974 997 0.93 25 29 4.7e-05 0.003 18.0 0.3 1 23 1003 1025 1003 1025 0.98 26 29 0.002 0.13 12.9 4.1 3 23 1034 1054 1033 1054 0.98 27 29 0.0034 0.22 12.1 3.4 2 23 1060 1082 1059 1082 0.96 28 29 0.00013 0.0082 16.6 0.2 3 23 1090 1110 1088 1110 0.98 29 29 0.0026 0.17 12.5 0.2 1 21 1116 1136 1116 1137 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCGGTGTCGGTCCTAAACTCCGTTGGGGTTCTTAAAAAACTCTATCGATGCAAATTGTGCGGGCACATTGCCAGCCGCAGCAATAACCTGAAGACCCATCTTGAAACGCACACCCGTGCCCTGCCGTACCTGTGTAAGAAGTGCGGGAGCAAGTTCCAGTGGCGGGCGGGAACCTCTGACTGGCTCTCCCGTGCGGACGTGGCAAGTGTTAACGGAAAGAAGACGTTTCGGTGCCGGGAGTGCGGGCACGCCACCGCCCGCAGTTACAATTTCAAGAAGCATTTACAGAGTCACGGTGAAGCGCAAGTTACTTGTCCTCGTTGCGGAGAGGCATCGGTCCCTGCCCCGACTCCGCGGGTTTACCACGTAAAAGAAGTCGAAACTGTGGAGGACGTTACGGCGGATGGCTGCCGGCGCAGGGCGTTCCGGTGCCGCCTCTGTCGAGCCATTTTCCCTCGTCGTGGGAGCTTGCACGCTCACCTGGCGAAGCACAAGCCTGTTGGGTTCCTCGTCTGCCACGCGTGTGGCGGAGAGTTTCTCGGTGAAAGGAGTCTGAGGGAGCACGAGCGTAGCAAGCATCCGCCTCAGCCCCAGCCCGCGCTGCCTTGCCCGTACTGCGGTGAACAGTGTCCCTCGCAAGACGCGCTCTACACTCACAGCAAGATACACATGACTGATTTGGATCAGAAGCCGGAAGAAATTTTCGACCCGAATGAGGTGCATGAGATCCTGGCAGATGCGTTGAAACACACGAGCCCGAGCGCACTCACCGCCCGGCGCTACGCAGAATGCGTCTTCTGCTCCGCCAAGCTCCCCAAGCCTGACATGAAGCAGCACATTCTGGAAACGCACCAGCTCGACGTCGTCGCGTGCGCCATTAAATGTGAGCAGTGCGAGAAAGTGTTTGGCGAAAAGCGGTTACTTCAGCGCCACGTAGAGCGCGTGCACGAACGGGTCATCAAAGCGTCGTGCGATACGTGCGGGAAAACGTTTCGGGATTGCTCCAACTACAAACAGCACCTCTTGATTCACACCGGGGAACGTTCCTACGTTTGCCACCTCTGCGGGAAAGCGTTTGCCCAGCCACAGGGTCTAAGGATGCATATGCCGGTGCACCAGACGGGGGTGAGGTTTGGGTGTCACCTGTGCTCGAAGGATTTCCGTAGGAAGCAGCACCTGGATTTGCATATACTGAAACACACGGGTAAAAAGACGCATCAGTGTGAGACGTGCGGGAAAGCGTTTGCATCGAAGAATGAACTCAAAATGCACAGCTGGATACATAAGGATGAGTGGCCCTACAAGTTAAAAACTAGCAGAAAGGCCAGGTCTGAACTTGAACAAGTTGCGAAGGGCCAACAGTTCGCTTGCACGATTTGCGGAAAAAACTTCACGAACGCGGATACAGCCCTAAGGCACGAACGCCGGATGCACCAGAGTTTGGTCAAAATCCCTTGCGAAATGTGTGCTCGCACCTTTACAGACCACTCCAACTACACTAACCACATGAAGCTGCACGTGGACGCGAAAAACTACATGTGTCAACATTGTGGGAAAAGGTTCGCGCAAGTGCAAGGTCTCCGCCACCACTTAGTCACCCACAAGTCTGATTTCCCGCACCACTGTGTGGTGTGTGGGCGTGGCTTCCGTCGGCGTTCCCACATGAACACTCATGCCACTTCCCACTCGAGGGTTCGACCCTTCGTGTGTGAGCTTTGTGGGAAAGCGTACCGCTTGCGTTATGATTTAAAGCTTCATAACGTCCGGTGTCATGGCGCTACGCCCACTTCCTTACATACGTGTTCGATATGCGGCAAACAATTTCTGAATCGCGCCTTTCTACGCCGACATAACCTCAAATGCGAGCCTCCAGTTCTCCTTCAGAATCGAAACCATTGTCGCCCCACCACCCTCAGTTTATTTGTTTGCAGGAGGCTCTTTCCTCCTGGAGTCACACATGAGTGTGTCCTGTGTGATCTGGAACCAATGGGCAGAGCCACCTACCAGCAACACATGTTCACTAACCACCAAGTGACGGCATATCACTGCCTCAACTGCGATAACATTATATCCACAAGGAAACGCGACCTTGTCAAGCACATGCGAGGTCATTACGCGGTGCCTCCAATACCCTATTCCTGCAGCAACTGCTCCCTGACCTTCGCAACGAAGAAAAAGCTATCGGCGCATCGTAAGGAGTCACACCCGCGCAATGTGGAGAAGAAAAACGATCGAGTCTGCCACAAGTGCGGGCAGGTGTTCGTCGGCTCTTCCGGACTTCGGTATCACCTAAGACACGTTCACCTGGGCGTTCGCGAGTTCGTTTGTCGCCACTGTGACAAACGGTTTGCTAGTCGTCCCGTTCTTGAGGATCACGAGCGTACCCACACCGGGGAAAGACCCTACACATGCCCCATTTGTGGAAAATGTTTCGGGAGCCGTGCTGGACTTTACGTTCACAAGCGTTCGCATACAGACGAGTTCCCGCACGCGTGTACAGTGTGCCCCCGAACGTTTCGCTGGCTGCAGCAACTAATTGCGCATGTTCGTCAGCATACGGGTGAAAAGAACTATGTCTGTGGGGCATGCGCCCGTGCATTCCGAACACAGAATGACTTGACTCGTCATACGGCTGTCCACTCCTCTGACAAACTGTTCCTGTGCCTCGTCTGTGGTCTCACTTTTGCCCAGAAACGTTACCTGAGAAGACATGAAATGACGCGACATAAACCAGACCCGAACCAAAATCAAACGAAGTGTTCACACTATTACAGGTTTGGCGAAACTTCGGAAAGCTGCCTTGTAGTCAGTGGTGACGGACTGCTTACTGACGTGGACACTGAGTACAACGTCTTCGAGATAGAATATATTGAAGTGGAGGAATGCCCGTCAGAACCTGTGGCTGAGCCTCCCCTCGTGTGCTCCTTCTGCTCAAAAACCTTCAATGCAACGTACAAACTTAAACGTCATATATCCCTCGTACACAACCCTGCGCGACCCTACGTCTGCGAAGTCTGCTCTAAAGCGTTCAGGGAACGGTACAGACTCAAGGCGCATTTGGCCACTCACTCTGTCTCGGATAATCCTGTTGCCTGTTCCGTTTGcgggaaaaaattcaataccCGCGAGTACTGCAGGCAGCATATGAAGAGGCACGCGGAGGCCGACATTCCCTGCAGTTCTTGTGACAGGCACTTCCGACATCACGCCGCACTGGCTGCACACAAGCGCCGCTGGCACTCGGGAGAGAAAGCCTACGGCTGCCCCAACTGCTCCGCTCGCTTTGCCGTCCGATCTGACTTGACACGGCACGCCCGCACCCACTACTCCGACACTTCCTACGCCTGCGCAAGCTGCGGCAAGATTTTCCAGCAAAAGCGATACCTTGCCAACCACTTACAGTCTTGCCCGTCTAAAGTCTAA
- Protein Sequence
- MESVSVLNSVGVLKKLYRCKLCGHIASRSNNLKTHLETHTRALPYLCKKCGSKFQWRAGTSDWLSRADVASVNGKKTFRCRECGHATARSYNFKKHLQSHGEAQVTCPRCGEASVPAPTPRVYHVKEVETVEDVTADGCRRRAFRCRLCRAIFPRRGSLHAHLAKHKPVGFLVCHACGGEFLGERSLREHERSKHPPQPQPALPCPYCGEQCPSQDALYTHSKIHMTDLDQKPEEIFDPNEVHEILADALKHTSPSALTARRYAECVFCSAKLPKPDMKQHILETHQLDVVACAIKCEQCEKVFGEKRLLQRHVERVHERVIKASCDTCGKTFRDCSNYKQHLLIHTGERSYVCHLCGKAFAQPQGLRMHMPVHQTGVRFGCHLCSKDFRRKQHLDLHILKHTGKKTHQCETCGKAFASKNELKMHSWIHKDEWPYKLKTSRKARSELEQVAKGQQFACTICGKNFTNADTALRHERRMHQSLVKIPCEMCARTFTDHSNYTNHMKLHVDAKNYMCQHCGKRFAQVQGLRHHLVTHKSDFPHHCVVCGRGFRRRSHMNTHATSHSRVRPFVCELCGKAYRLRYDLKLHNVRCHGATPTSLHTCSICGKQFLNRAFLRRHNLKCEPPVLLQNRNHCRPTTLSLFVCRRLFPPGVTHECVLCDLEPMGRATYQQHMFTNHQVTAYHCLNCDNIISTRKRDLVKHMRGHYAVPPIPYSCSNCSLTFATKKKLSAHRKESHPRNVEKKNDRVCHKCGQVFVGSSGLRYHLRHVHLGVREFVCRHCDKRFASRPVLEDHERTHTGERPYTCPICGKCFGSRAGLYVHKRSHTDEFPHACTVCPRTFRWLQQLIAHVRQHTGEKNYVCGACARAFRTQNDLTRHTAVHSSDKLFLCLVCGLTFAQKRYLRRHEMTRHKPDPNQNQTKCSHYYRFGETSESCLVVSGDGLLTDVDTEYNVFEIEYIEVEECPSEPVAEPPLVCSFCSKTFNATYKLKRHISLVHNPARPYVCEVCSKAFRERYRLKAHLATHSVSDNPVACSVCGKKFNTREYCRQHMKRHAEADIPCSSCDRHFRHHAALAAHKRRWHSGEKAYGCPNCSARFAVRSDLTRHARTHYSDTSYACASCGKIFQQKRYLANHLQSCPSKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -