Mfus014457.1
Basic Information
- Insect
- Mesopsocus fuscifrons
- Gene Symbol
- -
- Assembly
- GCA_950004255.1
- Location
- OX465380.1:573858-579248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0002 0.013 16.0 1.0 1 23 159 181 159 181 0.98 2 18 0.001 0.066 13.7 4.0 1 23 187 209 187 209 0.97 3 18 4.1e-05 0.0027 18.1 1.4 1 23 214 236 214 236 0.98 4 18 3.7e-06 0.00024 21.4 1.1 1 23 242 264 242 264 0.98 5 18 2.2e-07 1.4e-05 25.3 0.7 1 23 396 418 396 418 0.98 6 18 1.9e-07 1.2e-05 25.5 1.8 1 23 424 446 424 446 0.98 7 18 5.6e-06 0.00036 20.9 0.8 1 23 452 474 452 474 0.97 8 18 0.00012 0.0076 16.7 3.6 1 23 480 502 480 502 0.98 9 18 9.3e-08 5.9e-06 26.5 1.7 1 23 508 530 508 530 0.98 10 18 3.4e-05 0.0022 18.4 4.4 1 23 536 558 536 558 0.98 11 18 5.9e-07 3.8e-05 23.9 1.3 1 23 564 586 564 586 0.95 12 18 8.8e-06 0.00056 20.2 0.6 1 23 592 614 592 614 0.95 13 18 3.9e-07 2.5e-05 24.5 0.2 1 23 620 642 620 642 0.98 14 18 1.9e-05 0.0012 19.2 0.6 1 22 648 669 648 669 0.94 15 18 6.6e-05 0.0042 17.5 0.3 1 23 676 698 676 698 0.94 16 18 2.5e-06 0.00016 22.0 0.4 1 23 704 726 704 726 0.98 17 18 5.4e-06 0.00035 20.9 2.6 1 23 732 754 732 754 0.98 18 18 3.3e-06 0.00021 21.6 1.8 1 23 760 782 760 782 0.97
Sequence Information
- Coding Sequence
- ATGAATATTGAGCTGAAAAAAGAGAACGTGGAGGGGGAAACCAGCAATGCTGATTTGGAAAGTGGACCATCATTCCTTCCGCCCCTAGACTGTGTAAAGGAGGAGCTAGTGGAGGAGGAAACCTACGATGCTGATCTGACGAGAGGACCATCACACCTTCCGGCCCTTGAGTGTGTAAAGGAGGAGCTGGTAATCCACCCTATGCAGAGTGTAAAGGAAGAGCTGGAAGAGAAACCGCAGGTGACTTCAGACAGAGGCGTACAAGACGGAGGGACTAgcgtcagcagcagcagctactTCTTGCCCATTGAAAAAATTGAgctcgATTTGGGATGTGTAAAGGAAGAACTGGAAGAGACGTCAGACAATGGTGACCACGACGGGGAGACATCGGAGGACCCCCCACTCACAGCTCCCGTCACTGCCTACACACCGTCACCCGTGACACTCACCCGTCTTACCCCAAAGATGCGCTTCTCATGCAGTCTTTGTGAGAGGAGATTTCTACAGGAAAGCCAGCTTAAGGTGCATCAGCGAGTGCATACGGGTGAGAAGCCGTTCCAATGCCAATGTTGTGAGAAAAGATTTACTCAGTTAGGTGATCTTAAGAGACACAACCGCATACACACAGGTGAGCTGTTTTCATGCCTGCAGTGTGATAAAAAATTCGCACGAGCACTCCACTTGGAGGAGCACACCCGAGTACACACCGGCGAGAAGCCCTTCTCCTGCTCATACTGCGAGAAGAAGTTTACCCTTGCTGGCAGCCTGAACAAGCATATCCGACTTCATACGGATGATAGCGAAGGACCCGTGACAGAAGATCAGTCAGGATGGGCCAATGAAACTTCGCCTATAGATGCCAGCTCTGTTGTCAAAGTGGAACTGGAGGATAACGAAGGAGCCGGGAGTGAAGATCCATCGTCATGGACCAGCGAAGCATCGTCTGTAGACGTCAGCTCTGTCATCAAGGTGGAACTGGATGCCATCCAAGCGAGTAGGGAAGACGCACCGTCAAGCAGCGGACATCACACTCAGAGCCCATTTCAAGAATACTCCGGTCTCAGCCAAACAGCTGAATTCCATCATAACAGTTCTGAAGGAGACAGCATGTGTCCTGAAAATCCATCCTCCTGTATCAAATtcggaaaaaggaaaagaaatccGAACCCGGATGAAAAATCTTTCCCCTGCCTCGAATGTGGAAAAAGCTTTGCAAGAAAAGACAGATTAAAAACTCACATGTTGACTCATACAGGCGAAAGGAAATTTTGTTGCAAGGTTTGTGGAAAAAGTTTCGCTGAAAATGGTGGCCTTACAAAACATATGAGAACCCACAGCGATGAACGACCGTTTGCCTGTGAAATTTGCGGCAAAAATTTTCGGTTTCGCGCTTCATTCACGAATCACATGACGATTCACACTTTGGAACGGCCTTTTTCATGTGAACACTGCGGAGTCACTTTTCGACATAAAGCTGTGCTAAATAATCACCTAACCAGACACACTGGGGAGAGGCCTTACCCTTGCAAGACGTGTGGCAAAACCTTCAGTCGGAAAGATACCCTGACCGATCATATCAAATATCACAATAACGACAAACCTCATCAGTGCAAAGAGTGCGGCAAATGTTTTCGACGTCCCGGAATTTTGAGAAACCATGAAAAAactcatagcaacaagaagcCGTTTCTGTGCGGCGAGTGCGGGAAGTGCTACTCGGACAATAGCAGTCTGGTCAATCACATGAGACTTCACACCGGTGAAAGACTTTTTTTATGCCAGGAGTGTGGGAAGAGCTTTACGGAGAATAGGAGCCTTGTTTACCATTTACGAATTCATACGGGAGAACGGCCCTATGAGTGTAGTGAGTGCGGGAAGGGGTTTCGAAGCAACGCAGCGCTTAAGAGTCATATGGTGAGACACACCGCTGATAGTCTGTTTTCGTGTGACGGTTGCGGGAAAACTTTTgttgacaacaaaaaatttacaaaacatGCGAACACGTACGCCGGAAAAACTCActttttgtgcaaaatttgcgggaaaattttctttaaaaacgaTGAGTATGAAGTCCATATGGCGAACCATGACAGCGAAAAGCCGTTTTCGTGCCCGGAGTGTGGGAAGAGCTACAGACTAAAGTCAGTCCTCAACAACCACTTGCTCACGCACTCAGATGAAAAACCCTTCTCCTGCGGCGAGTGCGGGAAGAGCTTCAATAGGAGatttaaaatgaaacttcaCATGAAGAGTCACCAGTTTGAAATGGCCTTCCCGTGTATGGACTGTGGGAAATGCTTTACTAGAAAAGATACGTACGAAATTCATTTAGAGAGTCATAAGAGTGAAGCGGCTCAATGA
- Protein Sequence
- MNIELKKENVEGETSNADLESGPSFLPPLDCVKEELVEEETYDADLTRGPSHLPALECVKEELVIHPMQSVKEELEEKPQVTSDRGVQDGGTSVSSSSYFLPIEKIELDLGCVKEELEETSDNGDHDGETSEDPPLTAPVTAYTPSPVTLTRLTPKMRFSCSLCERRFLQESQLKVHQRVHTGEKPFQCQCCEKRFTQLGDLKRHNRIHTGELFSCLQCDKKFARALHLEEHTRVHTGEKPFSCSYCEKKFTLAGSLNKHIRLHTDDSEGPVTEDQSGWANETSPIDASSVVKVELEDNEGAGSEDPSSWTSEASSVDVSSVIKVELDAIQASREDAPSSSGHHTQSPFQEYSGLSQTAEFHHNSSEGDSMCPENPSSCIKFGKRKRNPNPDEKSFPCLECGKSFARKDRLKTHMLTHTGERKFCCKVCGKSFAENGGLTKHMRTHSDERPFACEICGKNFRFRASFTNHMTIHTLERPFSCEHCGVTFRHKAVLNNHLTRHTGERPYPCKTCGKTFSRKDTLTDHIKYHNNDKPHQCKECGKCFRRPGILRNHEKTHSNKKPFLCGECGKCYSDNSSLVNHMRLHTGERLFLCQECGKSFTENRSLVYHLRIHTGERPYECSECGKGFRSNAALKSHMVRHTADSLFSCDGCGKTFVDNKKFTKHANTYAGKTHFLCKICGKIFFKNDEYEVHMANHDSEKPFSCPECGKSYRLKSVLNNHLLTHSDEKPFSCGECGKSFNRRFKMKLHMKSHQFEMAFPCMDCGKCFTRKDTYEIHLESHKSEAAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -