Basic Information

Insect: Merzomyia westermanni
Gene Symbol: -
Assembly: GCA_949987695.1
Location: OX465290.1:153433879-153436097[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.033 16.2 4.9 1 23 225 247 225 247 0.96

2 10 3e-05 0.0049 18.8 1.5 1 23 265 287 265 287 0.97

3 10 6.7e-05 0.011 17.7 2.6 1 23 298 321 298 321 0.95

4 10 0.43 72 5.7 0.7 10 23 398 411 397 411 0.92

5 10 0.00013 0.021 16.8 1.2 3 23 418 438 417 438 0.98

6 10 0.0034 0.57 12.3 2.6 1 23 444 466 444 466 0.98

7 10 0.00022 0.036 16.1 5.1 1 23 471 493 471 493 0.96

8 10 9.5e-07 0.00016 23.5 3.0 1 23 499 521 499 521 0.99

9 10 0.00057 0.095 14.8 3.3 1 23 527 549 527 549 0.99

10 10 0.028 4.7 9.5 0.3 1 23 555 577 555 577 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.033	16.2	4.9	1	23	225	247	225	247	0.96
2	10	3e-05	0.0049	18.8	1.5	1	23	265	287	265	287	0.97
3	10	6.7e-05	0.011	17.7	2.6	1	23	298	321	298	321	0.95
4	10	0.43	72	5.7	0.7	10	23	398	411	397	411	0.92
5	10	0.00013	0.021	16.8	1.2	3	23	418	438	417	438	0.98
6	10	0.0034	0.57	12.3	2.6	1	23	444	466	444	466	0.98
7	10	0.00022	0.036	16.1	5.1	1	23	471	493	471	493	0.96
8	10	9.5e-07	0.00016	23.5	3.0	1	23	499	521	499	521	0.99
9	10	0.00057	0.095	14.8	3.3	1	23	527	549	527	549	0.99
10	10	0.028	4.7	9.5	0.3	1	23	555	577	555	577	0.95

Sequence Information

Coding Sequence: atggacGCAGGAGGAGAACAATTTTTCGATTCTCTGTGTAGGACATGTATGAGTCAACTTGCCGAATCTCCCTCATCTGACGCCACAATTAAACGAGAACAACAGTGGCAATCTATCTTTACCCGAATTGAGGAATGTGGCGCGTTACGTATCGCTGAGGTGCTATCCAACACAATACCACTAATAGAAGTACATCCAAGAGACGACCTGCCAAAGAAGATTTGTTGTATATGTCTGAGGCAGCTAATAGGTGTATATCGGTTCCACCGGCAGTGCTTAAAATCGGATCATGAACTGCGTGAATTGATTTCTAAACGAAGTGATGTTTTATATATCAGTTCAAAAGAGGATATCGAGGGAGACGAGATAAGTACAAAAGAGCTTCCAGTAGAACACTTGATTTCCGAAACCGCAAACAAGAGAATTGAGTTTGCTTCTAAAAATACATTGCCGGTGGAAACGCCATATAACGCAGATGACCCTTTAAAAATCATTAGCAACTCAAACAAACTTGGCAGGAATATTCAAGTCGACGTAAATGAGATACCGAGCGATGAGCATTATGCTGAACATAGCGATAACGAAACTCTGCCCTCTACGAACAGTGATCAAAATGTTGGTATGATAGGGGATATAGGTGATTTAGAACTAGTGGACTATACTTCGCCCTCACATAACTGTTTTATATGCAATAAAACGTTTAACGAGCCTCGACACCTAAATAACCACTTAAAGCTTCATAAAACAGAcgataaacaaaatgaaaatcctGAGCAGTCTGAGATCGACAACTTTATATGTGATATATGCAACCGTAACTTTAAAAAggagaaatctttaaataaacattatttaGTACACGACAACAAAACTAGTAGCCAGCTACAAAGTCATCCTTGTGATCTATGTAATAAGACGTACAGTTCTAATTTCACATTAGAGAGGCATAAAAGACTACGACATTCCTCTGTGCAGCCAACAATAGAAACTAGGTCCCTGAAAAATTCCGATTTATACACACCTAAAAATAACCAATCTGAAGGCACTGCTAAAGAACGACATCCTgctaaaaaaccaaaacaagatAAATCACTCAAATCACTGTCATGTACATTATGCGATAAGGAACTCTTAACCAAACTTTTTTACATTGAGTGCGCACATACATTAAAAATACGTTTATTTTCAGTTTGTAAAAATTCTGTTGCGTTAAGGCATCATATACGCAGGCATAAAACTGAACGTGTGTTGTGTCCCGAATGTGGCAAGTCATTCAGCTGCGAAGGCAATCTGAAAATGCATCTTTTACGTCATGGAGACGCGAAGCCCTACGAATGCCCCCACTGCCCGCGGAGGTTCCCTTGTATCAGCGATCTGTCTAACCACAAGAAAATACATGAAGCCAAAAGACACATTTGTCATATTTGTGGATCTGCTTTCACCCAACCTTATGAGTTAAAGAATCATAAAAAGCACCATAGTGGCGAAAGACCATTTAAATGTGATTATTGTGAAAAGCGCTTTGTTCGCCTTGATCAGCAGCGCCGCCACATGCGCACTCATACCGGTGAAAAACCATTCAAATGCAAATACTGCGAACGCGCCTTTGCTCAAAGTAACGATCATGTTAAACATTTACGTACTCACTTAGGCGataatatatatagatgtgaTTTGTGTCCCTTAGCTTTTCGTTTAGCTTCATTGAAACGCTTACACTTCGCTACTCATAAAAATGACGACGAAGAGACACGTGAACGTAATTTAAAAGCCTTGGAAGAGGAAGAGGCTAAGTTGGCTAAGTTATCGGTGGAGAGATTGCAGAAGTAA
Protein Sequence: MDAGGEQFFDSLCRTCMSQLAESPSSDATIKREQQWQSIFTRIEECGALRIAEVLSNTIPLIEVHPRDDLPKKICCICLRQLIGVYRFHRQCLKSDHELRELISKRSDVLYISSKEDIEGDEISTKELPVEHLISETANKRIEFASKNTLPVETPYNADDPLKIISNSNKLGRNIQVDVNEIPSDEHYAEHSDNETLPSTNSDQNVGMIGDIGDLELVDYTSPSHNCFICNKTFNEPRHLNNHLKLHKTDDKQNENPEQSEIDNFICDICNRNFKKEKSLNKHYLVHDNKTSSQLQSHPCDLCNKTYSSNFTLERHKRLRHSSVQPTIETRSLKNSDLYTPKNNQSEGTAKERHPAKKPKQDKSLKSLSCTLCDKELLTKLFYIECAHTLKIRLFSVCKNSVALRHHIRRHKTERVLCPECGKSFSCEGNLKMHLLRHGDAKPYECPHCPRRFPCISDLSNHKKIHEAKRHICHICGSAFTQPYELKNHKKHHSGERPFKCDYCEKRFVRLDQQRRHMRTHTGEKPFKCKYCERAFAQSNDHVKHLRTHLGDNIYRCDLCPLAFRLASLKRLHFATHKNDDEETRERNLKALEEEEAKLAKLSVERLQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -