Mwes049402.1
Basic Information
- Insect
- Merzomyia westermanni
- Gene Symbol
- -
- Assembly
- GCA_949987695.1
- Location
- OX465293.1:54483067-54493842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.5 83 5.5 0.0 1 23 282 305 282 305 0.87 2 10 3.6e-05 0.006 18.6 0.2 1 23 377 399 377 399 0.98 3 10 0.00028 0.047 15.8 3.3 1 23 406 428 406 428 0.98 4 10 1.7e-05 0.0029 19.6 0.9 1 23 434 456 434 456 0.96 5 10 3.1e-05 0.0051 18.8 0.3 1 23 462 484 462 484 0.98 6 10 2.9e-06 0.00048 22.0 0.6 1 23 490 513 490 513 0.98 7 10 0.00043 0.071 15.2 6.7 1 23 519 542 519 542 0.95 8 10 0.00031 0.052 15.6 1.8 1 23 548 570 548 570 0.97 9 10 0.00027 0.045 15.8 0.9 1 23 576 598 576 598 0.97 10 10 0.048 7.9 8.8 0.2 1 22 604 625 604 628 0.90
Sequence Information
- Coding Sequence
- ATGGCCACTACAAAATTCGAAGATATTGCTATACCAATTTTTGATGGCGCAAATTTCTCAAGCTGGAAAATACGACTTATGATGCTGTTGGAGTACAAGGACTGCAAAGAACCGGCTACCAGAACCAGGACAGAAAAAGATGAGGAAGGAAAGTGGAAAAAGAAAGATTTAAAAGCGAAACCCATATTAATTAGCACAATCTCAGACAAACAACTAGAGTACATCTGCGACTGCGACTCATCTTTGGATATGATCAACAAATTGGACAAGATGTACAATACACAATCAACGGCGTTACAGATTTTACGCAGAAACAATATTgatgaaattaaattacaaaattacgACACTGCTGAAGAATTCTTTTTAGAGTTTGAAAAGTCTGTAAATGAGTTCAAAGCGGCAGGTGGGAAGATGGAAGAACAAGAAAAAATGAGAAGCAAATCTGAAACTGCAGGGTGTTTGATTGACTATGTTAATTTGGTTGAAAATCAGTTTAATAAGCGAGTAAAGAAACTGCAATGTGATAACGGGAAAGAATATATGAACAAAGAAGTATTCGAATTTATCAAGTATAAAGGTATACAATTATTGCCATGCCCACCCTATGTGCATGAGCTAAACGGTGTAGCTGAAAGGTACAATAGGTCTGCTATGGATATAGTTGATGCTGAAAATTTTGAGAATGAGCATGAAATGGACGACAACATAGcactgaaagaaattaaaatggtATTCGAACAGCAAGGCAGCTTATACGCTTGCCTGTTATGTGATGATCATGGTACAATGTCTGCGGATATATTTGCTGAGCATTTGTCCAAAAACCATGGTTTAGAATTTTATACATGTGAAGTTTGTGGAGCTGGATTTCTTTCGATTGAAAGCGTAAAAGAGCATATAGAGCAATCACATATGGACagtgctacaacaacaaccacccaAAAAGAATGCGAAAAAGGTCAATGCCatgtttgtatacaaacttcagacAAAAATGTGGTTTGCTTACAAAGAAAAATTCACACAAGCTCCAATTCTCAATTTGAATGCTCTGAACGTCATAAGAAATAcagttgtgaaaattttttgttggatcacataaatatacatactgGCCTTAGGCCATATGCATGTGCAAAATGTTCTAAAGACTATGCCTCAAAATATGCCTTGCAAGTACATATGAAAATTCACGGTGATAGGCAACGTCCATATAAATGTGATACATGTAACAAAGCATTCCTTAATCAACAAAATCTTACACATCATAATAGGATACACACGGTCGAAAagacatttatttgtaatatttgtTCTAAGGCTTTCAGTTCCCAGCATAATTTGGACGTACATAAAATTGTACATTCGGGCGAACGGCCGTTTGTATGCCGAACTTGCGGTAAGACTTTTGCACGTCGCGCTGAAATTAAGGATCATGAGCGTATACATACAGGAGAAAAACCGTATAAATGTGATATGTGCGATGCTGCATTTGCACAGCGTTCAAATTTAATGACACATCGAAAGTCAACACATTTAAATCAGAAGTTGCATAAGTGCGATCAATGTGGACGCTGTTTTAAACGACGCCGTCTGCTGCATTATCACATAAATGCAGTACATACAGGTGTACGACCCCACGAATGTGAAGTATGCGGTTCGTCTTTTGTTTATCCCGAACATAAGAAAAAACATATGCTTATACATGGAAATTCTAAACCTTACCCATGCGAAGTATGTGGTAAAGAGTTTAATAGTTGTGCCAATCGAAATGCTCATCGGTTTGTACATAGCTCCAAAAAGCCTTATGAATGTATTAAGTGTGGTGCAGGTTTTATGCGAAAACCATTGTTATTAACTCATATGAATCATGCAGGACATACCAACgacacaattataataaatcaaCCACATATTAGCGATAATGGTACACTGTCCTTGGCCAGAGAGATGAGCACGATAGATTTTAGTGAGGAGGCAAACGTCTTTATTTCTCATGCCTCACAAGAATCAAATGTAAGTGCCCACAATGAAGCAGCACAAATTGTTTCTCATCAAAATGATATTATAAGTGATTGCACAGAAACCGATAGCGTGCAGTATCTACAGTTTGATGATTTAGATAAGGATGAAAAACATATAATAACCTGGGTGAACATTAGTTAA
- Protein Sequence
- MATTKFEDIAIPIFDGANFSSWKIRLMMLLEYKDCKEPATRTRTEKDEEGKWKKKDLKAKPILISTISDKQLEYICDCDSSLDMINKLDKMYNTQSTALQILRRNNIDEIKLQNYDTAEEFFLEFEKSVNEFKAAGGKMEEQEKMRSKSETAGCLIDYVNLVENQFNKRVKKLQCDNGKEYMNKEVFEFIKYKGIQLLPCPPYVHELNGVAERYNRSAMDIVDAENFENEHEMDDNIALKEIKMVFEQQGSLYACLLCDDHGTMSADIFAEHLSKNHGLEFYTCEVCGAGFLSIESVKEHIEQSHMDSATTTTTQKECEKGQCHVCIQTSDKNVVCLQRKIHTSSNSQFECSERHKKYSCENFLLDHINIHTGLRPYACAKCSKDYASKYALQVHMKIHGDRQRPYKCDTCNKAFLNQQNLTHHNRIHTVEKTFICNICSKAFSSQHNLDVHKIVHSGERPFVCRTCGKTFARRAEIKDHERIHTGEKPYKCDMCDAAFAQRSNLMTHRKSTHLNQKLHKCDQCGRCFKRRRLLHYHINAVHTGVRPHECEVCGSSFVYPEHKKKHMLIHGNSKPYPCEVCGKEFNSCANRNAHRFVHSSKKPYECIKCGAGFMRKPLLLTHMNHAGHTNDTIIINQPHISDNGTLSLAREMSTIDFSEEANVFISHASQESNVSAHNEAAQIVSHQNDIISDCTETDSVQYLQFDDLDKDEKHIITWVNIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -