Basic Information

Insect: Merzomyia westermanni
Gene Symbol: -
Assembly: GCA_949987695.1
Location: OX465290.1:153798837-153803523[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.5e-06 0.00092 21.1 3.9 1 23 235 257 235 257 0.97

2 10 0.017 2.8 10.2 2.4 2 19 277 294 276 294 0.97

3 10 0.00026 0.043 15.9 2.4 1 23 312 334 312 335 0.95

4 10 5.1e-05 0.0084 18.1 0.5 1 23 345 367 345 367 0.98

5 10 9e-06 0.0015 20.5 2.5 1 23 373 395 373 395 0.95

6 10 0.0025 0.41 12.8 4.0 1 23 401 423 401 423 0.97

7 10 0.0002 0.034 16.2 0.6 1 23 429 451 429 451 0.96

8 10 6.9e-06 0.0011 20.8 3.8 1 23 457 479 457 479 0.99

9 10 0.0017 0.29 13.3 2.8 1 23 485 507 485 507 0.99

10 10 0.00049 0.081 15.0 0.1 1 23 513 535 513 535 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.5e-06	0.00092	21.1	3.9	1	23	235	257	235	257	0.97
2	10	0.017	2.8	10.2	2.4	2	19	277	294	276	294	0.97
3	10	0.00026	0.043	15.9	2.4	1	23	312	334	312	335	0.95
4	10	5.1e-05	0.0084	18.1	0.5	1	23	345	367	345	367	0.98
5	10	9e-06	0.0015	20.5	2.5	1	23	373	395	373	395	0.95
6	10	0.0025	0.41	12.8	4.0	1	23	401	423	401	423	0.97
7	10	0.0002	0.034	16.2	0.6	1	23	429	451	429	451	0.96
8	10	6.9e-06	0.0011	20.8	3.8	1	23	457	479	457	479	0.99
9	10	0.0017	0.29	13.3	2.8	1	23	485	507	485	507	0.99
10	10	0.00049	0.081	15.0	0.1	1	23	513	535	513	535	0.98

Sequence Information

Coding Sequence: ATGAACACGACGAGTGAACATTTTCTCGATTTCCTATGTCGAACTTGTATGCAAGAATTAGTTGAAACATCCTCATATACGGCCAACAATAAACAAAAGCATCAGTGGCATTGGGTCTATGACACAATTGAAGAAAGTGCACCTTTGCGTATAGAAGAATTGCTATGCAACACAGTACCACAAATAGAATTTCAGCCAAATGACGAGCTGCCAAAGAAAATTTGTCGTAAATGCTTCGAACAATTACGAAGTATTTACAAGTTCCAACAAATGTGTATACAATCTCAGCAGCATATTCAACAATTGATCTCTAAAATAACCGCTGATTTAAAATTACCCATAAAAAATCCGTCACAAAACCATAAAGTAAACACGAAAGGGTTGGCAGTACAAGCATACAGTTCTGGCAAAACCAAAGAACAGGGAATTGAATTTGCGCTTGTGAACACTTTGCCTGAAGCAACGCAATCAACTTCTGCTGCTGACCCACTGCAAAGCGTCAacgaaataaaattggaaattcgCGTAGATTCAGAAACTGATATTAGCGTATATGTAATAAATGAGGTATGTACTGACGATGACACTAAAGTGGAACACAGCAATGGTGAAACACAGCTTTCAACGGTCGCTATAAAGAACAAAGTAGTGGATATAGAAACAGGAACAGAAGTTCAACAAGTAAGCTTGCCctCGTCAACACATATTTGTCCTTTATGCAAGAAATCGTTTACTCAGTCGCGCCTTTTGAAGACTCATTTAAAGCGTCACAAAAAGTGGGATGAACAAAAGGATAAACCAGTGCCTAAAAGAGagtattttcgtttaaaatgtaATACGTGTGACCGTTTTTTCTATAAGGCGGAATCGCTACATAAACACGACTGCAAGGGGGATAACAATCAAACCAAAAGGGATAACAACCAATGTACCTACACATGCGAAATTTGTAACAAGCCATTAAGCTCGCGTCGTACATTACGCAATCACAAAATTAACCATCATTCAGAAAGTAAACAGGCATTAAGAAAATTTGTATGCGAGATTTGCAATAAAGATTTTCTATATAAAGCAAATCTAACGCTTCATGTACGTACGCATACAGGCGAGCGACCATTCTTGTGTTCAGAGTGTGGAAAATCCTTCTCTAGAGCTAGATCCCTACATGAGCATCGCCTTCGTCACAGTGATGTCAAGCATTTCGAGTGTCCCAATTGTCCTTCAAAGTTTCACAGTAGTAGCGATCTGCACAAACACAAAACAGTTCATGAGCAAAACAAGCGGCATGTGTGCGACGTATGTGATGCTGGTTTTACCAAAGCATATCAGCTCAGGGTACATAAAATGTATCATACtggtgaaaaaaattataaatgcaaTTATTGTGATAAGGGTTTTGTGGGCAGGCACTCTTGGCGCCGTCATACGCGCACCCACACTGGTGAGAAACCATATAAATGCAAATATTGCGTACGCGCCTTTGCCCAAAGTAACGATCATATCAAACATTTACGTAGTCACATCGGAGAAAATGTGTATAGGTGTGAAATGTGCCCGTCGGCTTTCCGTTTAGCTTCGGAGCTGCGTGTACACTTTGCTACGCATAAACACGAGGATGAGGAGACACGTGTGAGGAATTTAAAAGCTTTGGAGGATGAGGAAGCTAAGCTGCAAATCAAAATCGCAACTTAA
Protein Sequence: MNTTSEHFLDFLCRTCMQELVETSSYTANNKQKHQWHWVYDTIEESAPLRIEELLCNTVPQIEFQPNDELPKKICRKCFEQLRSIYKFQQMCIQSQQHIQQLISKITADLKLPIKNPSQNHKVNTKGLAVQAYSSGKTKEQGIEFALVNTLPEATQSTSAADPLQSVNEIKLEIRVDSETDISVYVINEVCTDDDTKVEHSNGETQLSTVAIKNKVVDIETGTEVQQVSLPSSTHICPLCKKSFTQSRLLKTHLKRHKKWDEQKDKPVPKREYFRLKCNTCDRFFYKAESLHKHDCKGDNNQTKRDNNQCTYTCEICNKPLSSRRTLRNHKINHHSESKQALRKFVCEICNKDFLYKANLTLHVRTHTGERPFLCSECGKSFSRARSLHEHRLRHSDVKHFECPNCPSKFHSSSDLHKHKTVHEQNKRHVCDVCDAGFTKAYQLRVHKMYHTGEKNYKCNYCDKGFVGRHSWRRHTRTHTGEKPYKCKYCVRAFAQSNDHIKHLRSHIGENVYRCEMCPSAFRLASELRVHFATHKHEDEETRVRNLKALEDEEAKLQIKIAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -