Basic Information

Insect: Merzomyia westermanni
Gene Symbol: -
Assembly: GCA_949987695.1
Location: OX465291.1:7689490-7691798[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0024 0.4 12.8 0.8 1 23 171 193 171 193 0.96

2 11 2.2e-06 0.00036 22.4 1.6 1 23 199 221 199 221 0.98

3 11 0.0028 0.46 12.6 0.2 3 23 229 250 227 250 0.95

4 11 0.00023 0.038 16.0 1.4 1 23 256 278 256 278 0.98

5 11 0.00011 0.019 17.0 2.7 1 23 284 306 284 306 0.99

6 11 0.00046 0.076 15.1 1.1 1 23 312 334 312 334 0.95

7 11 0.00019 0.032 16.3 1.7 1 23 342 365 342 365 0.97

8 11 0.0004 0.067 15.3 0.8 1 23 371 393 371 393 0.98

9 11 0.014 2.3 10.4 1.8 1 23 399 421 399 421 0.98

10 11 5.8e-06 0.00097 21.1 0.9 1 23 427 450 427 450 0.95

11 11 1.3e-06 0.00022 23.1 2.5 1 23 464 486 464 486 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0024	0.4	12.8	0.8	1	23	171	193	171	193	0.96
2	11	2.2e-06	0.00036	22.4	1.6	1	23	199	221	199	221	0.98
3	11	0.0028	0.46	12.6	0.2	3	23	229	250	227	250	0.95
4	11	0.00023	0.038	16.0	1.4	1	23	256	278	256	278	0.98
5	11	0.00011	0.019	17.0	2.7	1	23	284	306	284	306	0.99
6	11	0.00046	0.076	15.1	1.1	1	23	312	334	312	334	0.95
7	11	0.00019	0.032	16.3	1.7	1	23	342	365	342	365	0.97
8	11	0.0004	0.067	15.3	0.8	1	23	371	393	371	393	0.98
9	11	0.014	2.3	10.4	1.8	1	23	399	421	399	421	0.98
10	11	5.8e-06	0.00097	21.1	0.9	1	23	427	450	427	450	0.95
11	11	1.3e-06	0.00022	23.1	2.5	1	23	464	486	464	486	0.96

Sequence Information

Coding Sequence: ATGTCTGCATCCATTGAAGATGATAGCGAAGCACACGATTTAGAAAATATTATACATTCGTTAAATAAAGAGATAGAACAGGACACATTTTGCCTGAGAGACAATTTAGAGGAATGTGAAGAGGAAGATGAGGGATCTGTAAGCGTTGAATATGTCGATAACCAATATTGTTTGGTTGAGTCCAAAGGGACTACTTCAAGCGGTGCCGAAAGAGGTTCAAAGGCTGTAACGGACAGTCGTGCAACGAAACCAAAAGGTTTCAATTTACCAAGTTCAAGCAAAGGGTCTAGAGTAGTATTTATTCATAATGCCCAGATTAAAACAGAAACGGAACAACTTGCTGACAATCCATCTGAATGCATAGAAACAAACCAAGAGATTTATGAGTTTGATGAGCTAGAAGAGCTTAGTGTAACAGCAGAAGAAAATGATCCTCACCGCAAGACTTTCCTGAAAATGTTACCGATAAAATCGGATGACCCCAAAGGAAAATCCAGTGATGCAATGTCGCATGCCTGTCCACAATGTCCTTATACAGCACCTAAACGATATATGCTATCGCGTCACTTGAAATCTCATTGTGATGATCGTCCTTATATTTGTTCTGTATGTGATCGGGGCTTCAAAACAAATCATACATTAAAAAACCATATAAATGTGCACCTCGGTAAGAAGCCATATGGATGTGACTCATGTGAAAGTCGCTTCACAACACCAGGCGACCTGGCAAGACACGTTAGATATAAACACACTCACGAAAAGAGGCACAAATGCACGGAATGTGAGTACGCTACTGTAGAATTGAGTAAATTACGACGACATATGCGTGCTCATACCGGCGAACGTCCATATCAGTGCCCTCATTGCACGTATGCTTCTCCGGACACTTTCAAATTAAAACGGCATTTGCGAACACATACTGGCGAAAAGCCATACCTATGTGATATATGTCAATCTCGTTTCACGCAATCAAATTCTCTTAAATCCCATAGACTTATACATAGTGTGGATGACAAACCAGTATTTCAATGTGCATTATGTCCAACAACATGCAGTCGGAAGACGGATTTGCGTATACATGTTCAAAAGCTGCATTACTCAGACAAACCGTTCCCTTGTAGAAGATGTGGGAAGGAACTACCGGATAGATATAGCTACAAAATGCATATCAAAACTCATGAAGGAGAACGTTGTTATAGTTGTGATATGTGCCATTATAAGTCGATATCAATGCGTAATTTGGAAATTCATAAACAAATCCACAGCAATGAAAAACCATTTGCTTGTGAGGTATGCGGTCAGACCTTCCGCCAGAAGCAGTTACTTACACGTCATACCAACTTATACCATACCGCAAACTATGTACCACCCCCAAAACTTGAAAAGATACATAATTGTCCATATTGTTCCCGTACTTTTGCGCATAAGGGGAATTTGGTTCGCCACATGGAAGTACATGATAACAACCGAAAAAATGAAAGCGATCGACGAACTCTCAACAGTAACACCGAAAGGGCAAATCAAGACGATTTCGAAAATCCGTATATGAATGGTGATGAAACTATGAACGGAGAAAGTTATGAAGAATTTGAAGTTATTGATGAAGCGGATGACGATATTGAAAATTATATGATTGTAGAATCAATTGAAGCAACGACGAGCATGGGTCGCAACAATCGTAAAAGTAATATAGCACACTCTGTGGAAGAGATAGAACAAAATGACTCTGAGAGTTCAAAATCCATAGTAAAGACAGAGAAAAGTAATGGCAAAGTTCGAAATAAGTTTGTGGAAAAAATCGTAGAGGAAGAGGGTGGAGGGTCTGGATATATGGTAGTAAAAGTTCTGGAAAGTGACGATGAATTGGATGAAGATGACGATAACTGCGTTATTTTAACAAACTTGGAGCACATGAAATCGATTGaTGAATCAAATGATATTAAATATAATGTTGGTGAAGACGTGGATAATTGCTTCGGGTTCAAAGCTGAAGACGATAGAGCTGATGATGACGTTGAAGAAACTGTTCTATTAAACATCATCGAGGAgaactaa
Protein Sequence: MSASIEDDSEAHDLENIIHSLNKEIEQDTFCLRDNLEECEEEDEGSVSVEYVDNQYCLVESKGTTSSGAERGSKAVTDSRATKPKGFNLPSSSKGSRVVFIHNAQIKTETEQLADNPSECIETNQEIYEFDELEELSVTAEENDPHRKTFLKMLPIKSDDPKGKSSDAMSHACPQCPYTAPKRYMLSRHLKSHCDDRPYICSVCDRGFKTNHTLKNHINVHLGKKPYGCDSCESRFTTPGDLARHVRYKHTHEKRHKCTECEYATVELSKLRRHMRAHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYLCDICQSRFTQSNSLKSHRLIHSVDDKPVFQCALCPTTCSRKTDLRIHVQKLHYSDKPFPCRRCGKELPDRYSYKMHIKTHEGERCYSCDMCHYKSISMRNLEIHKQIHSNEKPFACEVCGQTFRQKQLLTRHTNLYHTANYVPPPKLEKIHNCPYCSRTFAHKGNLVRHMEVHDNNRKNESDRRTLNSNTERANQDDFENPYMNGDETMNGESYEEFEVIDEADDDIENYMIVESIEATTSMGRNNRKSNIAHSVEEIEQNDSESSKSIVKTEKSNGKVRNKFVEKIVEEEGGGSGYMVVKVLESDDELDEDDDNCVILTNLEHMKSIDESNDIKYNVGEDVDNCFGFKAEDDRADDDVEETVLLNIIEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01358240;
90% Identity: -
80% Identity: -