Basic Information

Insect: Merzomyia westermanni
Gene Symbol: -
Assembly: GCA_949987695.1
Location: OX465290.1:153409456-153412440[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00022 0.036 16.1 0.3 2 23 227 249 226 249 0.96

2 14 6.5e-06 0.0011 20.9 1.6 2 23 262 284 262 284 0.96

3 14 0.00016 0.027 16.5 2.0 2 23 293 315 292 315 0.97

4 14 9.8e-06 0.0016 20.4 1.6 2 23 327 349 326 349 0.97

5 14 7.3e-05 0.012 17.6 0.8 1 23 364 387 364 387 0.97

6 14 6.5e-05 0.011 17.8 1.3 2 23 400 422 400 422 0.95

7 14 4.3e-05 0.0071 18.3 0.7 2 23 435 457 434 457 0.95

8 14 2.1e-05 0.0035 19.3 0.3 2 23 467 489 466 489 0.95

9 14 2.9e-05 0.0048 18.9 0.3 1 23 503 525 503 525 0.98

10 14 5.3e-06 0.00088 21.2 0.6 1 23 531 553 531 553 0.96

11 14 0.00047 0.078 15.1 1.7 1 23 562 584 562 584 0.95

12 14 1.6e-06 0.00027 22.8 1.3 1 23 589 611 589 611 0.99

13 14 4.3e-06 0.00071 21.5 3.3 1 23 617 639 617 639 0.99

14 14 0.0027 0.45 12.7 0.2 1 23 645 667 645 667 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00022	0.036	16.1	0.3	2	23	227	249	226	249	0.96
2	14	6.5e-06	0.0011	20.9	1.6	2	23	262	284	262	284	0.96
3	14	0.00016	0.027	16.5	2.0	2	23	293	315	292	315	0.97
4	14	9.8e-06	0.0016	20.4	1.6	2	23	327	349	326	349	0.97
5	14	7.3e-05	0.012	17.6	0.8	1	23	364	387	364	387	0.97
6	14	6.5e-05	0.011	17.8	1.3	2	23	400	422	400	422	0.95
7	14	4.3e-05	0.0071	18.3	0.7	2	23	435	457	434	457	0.95
8	14	2.1e-05	0.0035	19.3	0.3	2	23	467	489	466	489	0.95
9	14	2.9e-05	0.0048	18.9	0.3	1	23	503	525	503	525	0.98
10	14	5.3e-06	0.00088	21.2	0.6	1	23	531	553	531	553	0.96
11	14	0.00047	0.078	15.1	1.7	1	23	562	584	562	584	0.95
12	14	1.6e-06	0.00027	22.8	1.3	1	23	589	611	589	611	0.99
13	14	4.3e-06	0.00071	21.5	3.3	1	23	617	639	617	639	0.99
14	14	0.0027	0.45	12.7	0.2	1	23	645	667	645	667	0.96

Sequence Information

Coding Sequence: ATGGATATAATGGGTGAGCAGTATATAGATAGTCTGTGTCGGACTTGTATGCTTGAAATAGCTGAATCAACTGTAGTTGACACTAACACTACGTCGGAGCAGCAGTGGCAATCTGTATTTGATACAATTGATGAATGTGGCGCCAAACGAATCGCTGAGCTGATAACTAACACAATGCCGCAAATCAAAGTGCATCTATTTGACGAGTTACCAAAGAAAATTTGTCTGGAATGCCTACAGCAATTGCTAAGTGCATATCGATTTCAGCAAATGTGTGCACAATCCGATCAGCAAATGCGTGAATTGATAGCTAAAAGAAATACTGATGGTAATGCTGAGACATCACCGGAAAATGAAATAAGCacagatttttttgcacaggaaTTCAATTTGGAAGCTACAAATTTCGAAACCTTACCGGAAGCACCCCAAGCAACTACTAATGGCACTTCACGAAGCAACGATGAAGTAATTGAACATTGTGAAGATTCACAAATAGACCTCAGCGAATTTCTTAAAAATGAGACATTTTATGATGAACCCACAGTTGAATATAGCGATGATGAAACATTACTTTCCGCGAACTCTGTAAAAGACGAGGTTTTGACAGTAGAAACAGAGGAGAAACAAATAAGCACTTCTTCGTCTATGCACAACGTGCACAAGTTGCAAGGTATTGTCTGTAGTCTGTGTAAAAAAACGCTCAGCAACGAATTTGCATTAGCAAGACATATGAAGATAAGACATGCTAATCAAAGACTAACACAAAATATTGCTAGACCTGTTTGTGATATTTGTGGCATGACGTTCAGCAGGCCGTTTACATTAGAGCGTCATAGAAGACATCAGCATGGTGACAATGAATCGGGGAATGTAACATGTGATTTATGTGCCAAAACGTTCAGCTCTAAGCTTTTATTAAAGAAGCATACAAGGAAAAGGCATTATAACAAAAAGccccaaaaaaatgttaaagttcAATGTAAACTTTGTGAGACCACGTTCAGTAGACGGTCGTCATTAGTTAGGCATGAAAGGCGGCAACATACTACAGAAGCTGAAAATACCCCAAAGGAAAATATAACAAGGTATCCTTGTGATTTGTGTTCGAACACGTTTAGCTCGCGCTTTTCATTGGAAAGACATAAAAGAGTAGTGCATTATAACGAAAGACCGCCCAAACCTAATAAAATGCCTACTTGCGACCTATGTGATGTAACTTTCAGCAGGCGTTCTTCATTATTAAGACATAACAGATACCAACATTCAACAGAAAATGCACAGAAAACAAATGTGAAGTTACCTTGCGATCAATGTGGGAGAACATTCTTTAGCTATTATTTATTGTGGAGACATAAAAGAATAAGACATGCTATACGTAAAATCGATCACAAGATACCTTGCGATATATGTGGGAACATTTTCACCAATCGCTATTCATTAACCAGGCATAAAATGCGTATCCATTGTACGAACGCAGAAGAATTGCagaaagaatttgaaaaatatagatGTGAATTCTGCAACAAAGGTTTTGCCGATTCCATTACGCTAAGGGACCATATCGTTACACATACGGGCGAGCGGCCATATTTGTGTCGTCAGTGTGGTACAACATTCATCACGGAAAGTAACCTCAATCAACATATTTTACGCCACCAGAAAATAAGTGTAAATAAAGGTCACGATTGCGATATCTGTGGATCTAGCTTTGCCAAAACTGATCAATTGAGGCGCCATAAATTGTATCATGGTGAACGACCATTTAAATGTGACTATTGTGAATTGAGATTTGTACGGCCGGATGATCAACGCCGTCATATGCGCACTCATACCGGTGAAAAACCCTACACATGCAAATACTGCGGACGCAGTTTTGCTCAATGTAACGATCGTATCAGACATATGCGTATTCACGTCGGTGAAAATGTTTATAGATGTGAATTGTGCCCTGCAGCTTTTCGTTTCGCTACAGAATTGCGTCTACACAATAATGAGCATAACAACGACGATGAAGAGACGCGTGACCAAAATATGAAAGCCTTAATGGAAGCAGAAGCTGAACTGGGTTTAAAATTCCCACGAAATATATCACCGGAAGATCTGCCAACAACCAGTTAA
Protein Sequence: MDIMGEQYIDSLCRTCMLEIAESTVVDTNTTSEQQWQSVFDTIDECGAKRIAELITNTMPQIKVHLFDELPKKICLECLQQLLSAYRFQQMCAQSDQQMRELIAKRNTDGNAETSPENEISTDFFAQEFNLEATNFETLPEAPQATTNGTSRSNDEVIEHCEDSQIDLSEFLKNETFYDEPTVEYSDDETLLSANSVKDEVLTVETEEKQISTSSSMHNVHKLQGIVCSLCKKTLSNEFALARHMKIRHANQRLTQNIARPVCDICGMTFSRPFTLERHRRHQHGDNESGNVTCDLCAKTFSSKLLLKKHTRKRHYNKKPQKNVKVQCKLCETTFSRRSSLVRHERRQHTTEAENTPKENITRYPCDLCSNTFSSRFSLERHKRVVHYNERPPKPNKMPTCDLCDVTFSRRSSLLRHNRYQHSTENAQKTNVKLPCDQCGRTFFSYYLLWRHKRIRHAIRKIDHKIPCDICGNIFTNRYSLTRHKMRIHCTNAEELQKEFEKYRCEFCNKGFADSITLRDHIVTHTGERPYLCRQCGTTFITESNLNQHILRHQKISVNKGHDCDICGSSFAKTDQLRRHKLYHGERPFKCDYCELRFVRPDDQRRHMRTHTGEKPYTCKYCGRSFAQCNDRIRHMRIHVGENVYRCELCPAAFRFATELRLHNNEHNNDDEETRDQNMKALMEAEAELGLKFPRNISPEDLPTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01358225;
90% Identity: -
80% Identity: -