Mwes021963.1
Basic Information
- Insect
- Merzomyia westermanni
- Gene Symbol
- -
- Assembly
- GCA_949987695.1
- Location
- OX465290.1:9615211-9616644[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-08 3.4e-05 25.1 0.2 6 45 250 289 246 289 0.91 2 2 1.5e-08 1.3e-05 26.4 0.1 11 40 365 393 359 399 0.80
Sequence Information
- Coding Sequence
- ATGCGTGTTAATGAGTTTGTGGAAAATACGGATGagaacaacatcaacaacatatCTGTCGGTgaattatataattatatagATGATAAAGAgaatttattgcaaacaaacGAATTATTTAAACcaaagttacaacaacaaaatatgaaGGAATACAGATTAACAAATATCGAAGAAAATTACATATCACCACGTAAAGATCATCTCCTCGAGAAGCATCATAatgtaacaacaacagcaaaggaTGGTCATCATGTACTCATGCTTACACATTTCGAcgaacaacattttcattttgagTATGTAACACCGAAAAAATATGAGACAGCCACAATCACAGATCTTACACCAACCATGCATCAACTGCAATCACAGCCGCCACTCCAACAGCCACAACACAACCAGCTTTGTGACAACTCCAACTCCAATATACAAACTATGACTGAAAGCTGCTTACCTATGAATCAAGAAAATATTGTGCCATTTATGGATATGGAAAAATCAGAAGTAGCAACAAATAGTAATAATCCAGATGAAGGTTTAAATTTTGCTGCTATGGTTGCAGAGGCATGCGAAGGCCTCTTTGATGAAATTGAAAAAGACCTTCAAACATACGAAACAGACGGTGATAACAATAGTTGTCATGATATTGAATCGAATGAGTCCACGTCGGATGCTAGCATTTGTAGTACCACCACCACAGCTTCAAATCAACGTAAGAAGCGTTCACATAACTCTGAAGCAGTTAAATTAGCTACAAATGCCGTTGTGGAAGGCGGCATGAGTCTGGGGGAAGCAGCAAAACGTTTCAGTGTGGTGCGTTCGACGGTATCATCGCGTGTGGCAAAGCATCCCAAATATAAACGACGAAAACCCAATAAAGAATTGGATGAACTAATACGTAGTAAAATAAAGGCTGGTCTACAAATATCGGAAATAGCACGTTCGCTGCATGTACCTAAATCGACCGTACATTTACATAAGACAAGATTAAAGAATAGCGGACAATTACCGCCAATATGGATAAGATGCGGTAATAAGGATGTGGTTGATCATGGTGTGCAAGATCGTTTGATACAAGCCTATCGTGGGCATATCGTTAATGGAATGTCAGTGCGTTTTGCTGCTGAATTCTATTCTTTACCCATTACAACTTTATGGCGTTATATAAAGCGTAgaaaaaatgcaacaacaaatattgttgacgATTTCCACAATGATTCGACAATAGATGAAGCCGCAAATCATGCCATAGATAACAATGTGCTAAATGctgcacaatttttcaaagacttAAATATTACTGAAAATGCGCACAACAGAGAAGTCAATTTAGAATGTGCTTCAGTTGCATGGAGTACTGATTTAGTGAATTTTACggcaaaagaagaagaaattattgAACAAACTTTGATAAATGCACTTTTAGAATAA
- Protein Sequence
- MRVNEFVENTDENNINNISVGELYNYIDDKENLLQTNELFKPKLQQQNMKEYRLTNIEENYISPRKDHLLEKHHNVTTTAKDGHHVLMLTHFDEQHFHFEYVTPKKYETATITDLTPTMHQLQSQPPLQQPQHNQLCDNSNSNIQTMTESCLPMNQENIVPFMDMEKSEVATNSNNPDEGLNFAAMVAEACEGLFDEIEKDLQTYETDGDNNSCHDIESNESTSDASICSTTTTASNQRKKRSHNSEAVKLATNAVVEGGMSLGEAAKRFSVVRSTVSSRVAKHPKYKRRKPNKELDELIRSKIKAGLQISEIARSLHVPKSTVHLHKTRLKNSGQLPPIWIRCGNKDVVDHGVQDRLIQAYRGHIVNGMSVRFAAEFYSLPITTLWRYIKRRKNATTNIVDDFHNDSTIDEAANHAIDNNVLNAAQFFKDLNITENAHNREVNLECASVAWSTDLVNFTAKEEEIIEQTLINALLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -