Mequ040628.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- -
- Assembly
- GCA_958301585.1
- Location
- OY284417.1:4607112-4609628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00011 0.024 16.6 0.3 2 23 15 36 14 36 0.97 2 16 0.77 1.7e+02 4.5 5.9 1 23 42 65 42 65 0.90 3 16 0.00013 0.028 16.4 0.3 3 23 70 91 68 91 0.94 4 16 0.0033 0.73 11.9 0.2 2 21 100 119 99 120 0.92 5 16 6.8e-05 0.015 17.2 0.8 1 23 128 150 128 150 0.97 6 16 0.0013 0.28 13.2 2.1 1 23 156 178 156 178 0.97 7 16 0.00025 0.055 15.4 2.6 1 23 184 206 184 206 0.95 8 16 6.4 1.4e+03 1.6 6.4 3 22 214 233 214 233 0.92 9 16 0.12 27 7.0 1.7 1 23 504 526 504 526 0.92 10 16 0.052 11 8.2 4.1 1 23 534 558 534 558 0.95 11 16 1.9 4.2e+02 3.2 0.6 2 23 563 584 562 584 0.93 12 16 9.3e-05 0.02 16.8 0.7 1 22 595 616 595 616 0.95 13 16 0.01 2.2 10.4 3.0 1 23 624 646 624 646 0.93 14 16 1.1e-05 0.0024 19.7 1.8 1 23 652 675 652 675 0.96 15 16 6.5e-05 0.014 17.3 0.2 1 23 681 703 681 703 0.98 16 16 0.002 0.43 12.6 1.3 1 21 709 729 709 730 0.95
Sequence Information
- Coding Sequence
- ATGATGGTCCAAATCACCACCGACAAGTCCGGCGCCAAGTTGGTATGTCCAATTTGCAACAAGTCCCTTATATCCCTCAACGGCTACATGAAGCATATGAAGAAGCATGAGCCGCCTGGGGGATTCTGTTGCAATTACTGCGACGACCGCTTTTGCCTTGAGGATCTACTTAAGAAGCACAAGGACGAAAAGCATAAGGTGCTCGCCTGTCAGATATGCCATGCAACGTTCTCCACTCCAGCGGAGTACCGCACGCATATCAAAGACGTTCACCAGGGTATTGACCGCCTAATGTCGGTTTGCGAGAAGTGCGGCATGGAGTTCAAAACCTCACAGGCCGCCAAGAGGCACAGGGAAACCCAATGCGGCCAGATAAAACCGCATCCTTGTGATGAGTGTGAAATGGCGTTTTACACAAAGTACAACTTGGCCGAGCATAAGAAGATCCACAAGGGAGAGAAGAAGTTCTGCTGCAGCTACTGCGGAAAGAGCTTCCTGAACAACGGGCGACTGGTGATTCACGAACGGAGCCACACCGGGGAAAAGCCTTATAAATGCGATGTATGTGGGAAGTGCTTCGCCCATCGGGAGAGTATCGTCACGCATTCCTCAATCCACACGGGCATCAAGCTGGTCGGCTGTAAGTGTTGTGGAGCTCGATTTTCCTGCCACTCCAATCTGATAAAGCATCGACGAACGAGACCGGAAACCTGTGGTCTGCCTGTCTACGACTCCACTAAGGAGACCAAACGGACGCGGAACTCGAGAATCCCAGCTAGTCTGATGTCGTCCGAGATCAAGATCGTTCGGGCTAGTAAGGTCATAAATCCCAATGAGGAACAGAAGAAATCCCGATTTTCCAGGACAAAGAAGCAATCATCCAGCTCTGACGATGACGAAGTTATCATCAAACGTCCAAGGAGAGTTTGTCCCTCGCCGAAACCCGATAATCATGTTGAAGAGTCGCCAAACGAATGCGAATCCGATAACGATCGTGACAACGAACCGCTTCAAAGCTCTTACGAATCCGACGGTCCTCCTCCCCTAGATGATACCAAACCACATTTTCCCGAAAACATTCCAATTAAAGCCACCTCCGATCAGAAGCTCCCTATGGCGCACGTCTTCACTGAAAAAGATGAGCTCCTGGAAGACCTACTGAATGAACATGATACATCCATCAAGAGCGAACCGATAGTCGAGATTAAGGAAGAAAATGGTGTCCAACCGCCAGTCAAACGCTGCAAGGTTGTCCTCAAAAACATGAGAAACTCAGATCAAAAACTCACTTCATCGTCGAAACCAAGAGCTAAGCGTAAACGTTCAGCCTTACGGAAAAAgcttaatttatttaagaaGGAGCGCGTCTACGACTGTATGTTTTGCATGAAGGTCTACCACATCCGCAAGCCGTACGAGAAACACCTCCACGAACAGCACGACAAAACTGATGAGGAAATCCGTAATCTCTTCAAGGAGGAAGACAACGACATTCCCGCCGATCTCGTGCATCGCTGTCCGATCTGCTCGAAGGTCTATCTGATGGCAAAACGACTGAAAACACACATCACATTCCACGGCCCTGATGGCAGTTTAATCCACAAGTGCCCTTGCTACTGCAAGATCCATTTCCGGACCAAGGAGGAAGCTATGGAACACGCTAAGATCGCGCACAAGTCGGCCATTTACTGTGAAATCTGCGATCGATACGCCCAGTCACCCGAAGCGCACAAGATCCACAAGCGAACGCACTTCGAACGTCGGAAGCAAACCGATCGGAATTTCATCTGCGACAAGTGCGCGAAATCCTTCTCCAGCCGCACATCCCTGAACGATCATACTCGCTCGAATTGTGGCCAGAACCCACTCTATCACTGTGATGTTTGCGACAAACGTTTCTGTACCGCGGGTATCTTGAAAACCCATTCGCTTCTGCACAAGGATGATACGCCTTTCGTGTGTGATAAGTGCGGAAAAGCCTTCAAAATCCAATCCCAATACAAAACACACTTGAAGCAGCGACACTCGGAGGATAAGCCGTTCAAGTGTGAGTTGTGTCCAAAGCAGTATCCATACCGCGAAAGCCTTCTCACGCATATGGCAATTCACACAGGTCTCAAGCGCTATTCGTGCGACGGATGCAGTAAACGGTTCACGTGCATCTCGAACTTACAGGCGCATCGGAAGGTGTACGCGGATACGTGTGGCCTACAGCCGTTAAACTCAAAACCAAGCCAGTATATTGGAATGCAGAAGGGACTGCTATTGATGGGCTCTAAGCCGATTTTCTAA
- Protein Sequence
- MMVQITTDKSGAKLVCPICNKSLISLNGYMKHMKKHEPPGGFCCNYCDDRFCLEDLLKKHKDEKHKVLACQICHATFSTPAEYRTHIKDVHQGIDRLMSVCEKCGMEFKTSQAAKRHRETQCGQIKPHPCDECEMAFYTKYNLAEHKKIHKGEKKFCCSYCGKSFLNNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVGCKCCGARFSCHSNLIKHRRTRPETCGLPVYDSTKETKRTRNSRIPASLMSSEIKIVRASKVINPNEEQKKSRFSRTKKQSSSSDDDEVIIKRPRRVCPSPKPDNHVEESPNECESDNDRDNEPLQSSYESDGPPPLDDTKPHFPENIPIKATSDQKLPMAHVFTEKDELLEDLLNEHDTSIKSEPIVEIKEENGVQPPVKRCKVVLKNMRNSDQKLTSSSKPRAKRKRSALRKKLNLFKKERVYDCMFCMKVYHIRKPYEKHLHEQHDKTDEEIRNLFKEEDNDIPADLVHRCPICSKVYLMAKRLKTHITFHGPDGSLIHKCPCYCKIHFRTKEEAMEHAKIAHKSAIYCEICDRYAQSPEAHKIHKRTHFERRKQTDRNFICDKCAKSFSSRTSLNDHTRSNCGQNPLYHCDVCDKRFCTAGILKTHSLLHKDDTPFVCDKCGKAFKIQSQYKTHLKQRHSEDKPFKCELCPKQYPYRESLLTHMAIHTGLKRYSCDGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSQYIGMQKGLLLMGSKPIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00688896;
- 90% Identity
- -
- 80% Identity
- -