Mequ027363.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- -
- Assembly
- GCA_958301585.1
- Location
- OY284415.1:12854420-12863718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.065 14 7.9 0.4 1 23 114 137 114 137 0.96 2 12 0.08 17 7.6 3.6 2 23 281 301 280 301 0.96 3 12 0.00015 0.032 16.2 0.7 1 23 307 330 307 330 0.97 4 12 3.4 7.3e+02 2.5 0.9 2 23 337 358 336 358 0.88 5 12 3.9 8.4e+02 2.3 0.6 2 23 363 384 362 384 0.90 6 12 0.00017 0.038 16.0 1.8 1 23 390 412 390 412 0.96 7 12 1.7e-07 3.6e-05 25.5 0.9 3 23 424 444 422 444 0.97 8 12 1.1e-05 0.0023 19.8 1.5 1 23 451 473 451 473 0.99 9 12 1.7e-05 0.0038 19.1 0.9 2 23 479 500 478 500 0.96 10 12 0.00025 0.054 15.5 1.3 1 20 506 525 506 528 0.93 11 12 0.0086 1.9 10.6 0.6 2 19 534 551 533 553 0.94 12 12 2.7e-05 0.0059 18.5 0.3 1 23 560 583 560 583 0.98
Sequence Information
- Coding Sequence
- ATGGGGTCCGAGAGTGAGTTGACATACCTGGATTGTTTCCTTGCCTGTACGCGTCTTGAGATTGAACTAagtgaaaattgtccacaaagcTTGTGCAGTGCCTGTGGTTTGGAGCTAAAAATTGCTTACGAATTTCTTCAGAAAGCTGAATCGGCGGATAGGATCTTACGACAACGTGCGGCAAACTCAAAATTAGTTAAATTGGAAGATGAAAAACCTGCGAGCCCAACCGTCTGCGAGAGTATTGGGAGTGATGATTCGGGTAAACAAGATGTCTTTAGCACTacaaatgatcaatttgaaCAGCAGGGAGAGTGTCAGGTGGACGATGAAAAAAGTTTCATCTGCACTATATGCGGCGATCAGTTTTTCTCGCAGTTTGTTCTTAATTTGCACGTCAACAGGTCCCATCCTGCAACCTGTGACGATGAAGAAAAATATTCCGTTGGCAAAATTGAATGTCAGATATGCGAGAATGTAATTCCTCTAGACGTACTGAGCACCCACATGCAGATGCATGAGGACGAGGAAGTCATGAATGACGAATCTACTGAGAACAATGAGGAACAGTTTATTGATATAGGGGACGAAGCAGACTTCGAAGTATTAGACATGAATGGTGATTCGGGGTCAGCTATTCTAAACAACAGAAGTCCGAGGTCGGAACTCCAAGAAGAGGACACTACAACGGCAGAGGACTATGAACAGCGTTCcggtgaagaagaaaaagatgattctCAGACGAAAGACGACTCAAACTTCAGAGACAGAAAGTTTACTTTAATAGAGAAAATCCTGACAAGTGAAGAGAAAGCTAGGGCGATAAAGCCTAGTTATATTCATTGTACAGTTTGCGACAGACACGTTAAAAGCTCATCATTCCAAACACATATGAACATACACAACGGTATACGCCAATTTGCTTGCGAATATTGTCCCGAAAATTATTACTCAAAACGGACTCTTCAGACGCACGTAAAAACAGTGCACAAGGAACATTTGAAATCAGTTTGCAAGGTGTGCCAGGAACCCGTTGATGCCGTGCACATGAAGACACACATTCACGAAAAGCACTTACGGATAgttaaatgtgaaaattgtgatTACGAGGGACAGGAAATCAAAATGAAAGAACACATGAAGAGAAGGCATGCAGAATCACGAGACTATCTTTGTAATATATGCTCTAAAACCTTCTGCACTTTGGGAGTACTCAACGCACATTTGAAATACCACGAACGGAAGGAGTCGAACATCAAGTCCGATGCTTGTGGAATATGCGGCAAGGTCTTTTCCACCAACCATTACCTGAAATCTCACATGCTTACTCACCAGGACGAACGCCAAAAGTTTCAATGCAGTAACTGCGATAAAGCATATCATTCAAAAGCGGCATTGGATAACCACATGCGTATGCATAAAGGAGATACCATCAAGTGCTTATTATGTTCCAAACAGTTTGCTAGACAATACGAATTAAACGTTCATATGCGCTTTCACACAAAAGACTACCCATTCGAATGCGAAGTTTGTCAGAAAAAGTTTGCAATCAAAGGGCACCTGAGGACTCATATGTGGCGTCATCAGGGTTTAAAACTACAATGCGAGGAATGCGGTAAACTCTTTACGTCGACGAAGGCGTTACATGAACATTCATTTTGTCATTCTGAAATGCCATTCCCTTGCCCATACTGCACGAAAGCGTATCCTTCCAAGCCCAAATTCAAAGTTCACTTGAAAACCGCTCATATGGTTGAGTTTTCGAACGAAGAGCTGCAGAAAATGAGCAAATTTCCATTGCCAAAGCGATCAAGATCGAAAAAGTTCACGCTCGTTCAAGCGGACACCGTAATGAAAGAGGTTGAAGTGCACACCAAAGAGGATGACGAGCACACGGGAACCCTATCGCTTGCCGAGTACTACTGGATTCTGGGTCTCAATCGTCTTTTGTTGTGGAATCATTCACTCAGATATCCTCGCAAGCATGCTCGAATTCCCGTCTCCGGTCTATCCTCTATGGAAGTTGGTTACACAAAGGGATGCAACACTGAGCAACACTTTCGTCAAACTTTCGCTCGCTCAACAGATGGTAAATATGTTGTTGCATTACCTTTCAAAACCCCGCAACCCACTTTCGGAAACACACTACCATCAGCAGTTTCGCGCTTCCACTCCATGGAACGACGATTTCAAAACAATCCTCAGTTGCATCCGTTGTATTCGGATTTCATGAGGGAATACCTAGAACATGGTCACATGGAAAGGATTCCATCGGATGAAGTAAATTCAGTCCTGGGTAAAAGGTTCTATTTACCCCATCATGCAGTCTTGAAACCCGACAGCTCCTCTACGAAACTACGCGTTGTGTTTGATGGATCTGTAAAAGATTCTGACGGTCAGTCCTTAAACAGTACGCGGTTGCTAGGCCCTCCAATTCAGCGAGATTTGATTGGTGTAACCTTGCGTTTTTGGCATCATCGGTACGTTTTTACAGCCGATGTCGTAAAAATGTTTCGTCAGATCTGGGTGGACGAGTTACACACCGATTATCAACGCATTGTTTGGCGCGATAATCCCTCAGAATCCGTCCAGCATTACCGGTTATGTACCGTTACGTATGGTACTGCGTCAGCTCGGAATCAAACCCTGCCGACTGTGCTTCGAGGGGTACAACCCCATCCAACCTAG
- Protein Sequence
- MGSESELTYLDCFLACTRLEIELSENCPQSLCSACGLELKIAYEFLQKAESADRILRQRAANSKLVKLEDEKPASPTVCESIGSDDSGKQDVFSTTNDQFEQQGECQVDDEKSFICTICGDQFFSQFVLNLHVNRSHPATCDDEEKYSVGKIECQICENVIPLDVLSTHMQMHEDEEVMNDESTENNEEQFIDIGDEADFEVLDMNGDSGSAILNNRSPRSELQEEDTTTAEDYEQRSGEEEKDDSQTKDDSNFRDRKFTLIEKILTSEEKARAIKPSYIHCTVCDRHVKSSSFQTHMNIHNGIRQFACEYCPENYYSKRTLQTHVKTVHKEHLKSVCKVCQEPVDAVHMKTHIHEKHLRIVKCENCDYEGQEIKMKEHMKRRHAESRDYLCNICSKTFCTLGVLNAHLKYHERKESNIKSDACGICGKVFSTNHYLKSHMLTHQDERQKFQCSNCDKAYHSKAALDNHMRMHKGDTIKCLLCSKQFARQYELNVHMRFHTKDYPFECEVCQKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALHEHSFCHSEMPFPCPYCTKAYPSKPKFKVHLKTAHMVEFSNEELQKMSKFPLPKRSRSKKFTLVQADTVMKEVEVHTKEDDEHTGTLSLAEYYWILGLNRLLLWNHSLRYPRKHARIPVSGLSSMEVGYTKGCNTEQHFRQTFARSTDGKYVVALPFKTPQPTFGNTLPSAVSRFHSMERRFQNNPQLHPLYSDFMREYLEHGHMERIPSDEVNSVLGKRFYLPHHAVLKPDSSSTKLRVVFDGSVKDSDGQSLNSTRLLGPPIQRDLIGVTLRFWHHRYVFTADVVKMFRQIWVDELHTDYQRIVWRDNPSESVQHYRLCTVTYGTASARNQTLPTVLRGVQPHPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -