Mequ014616.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- su(Hw)
- Assembly
- GCA_958301585.1
- Location
- OY284413.1:167305616-167320433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0045 0.99 11.5 1.7 1 21 126 146 126 147 0.93 2 13 8.5e-05 0.019 16.9 0.2 3 23 198 219 196 219 0.89 3 13 1.1 2.5e+02 3.9 0.1 1 23 225 247 225 247 0.92 4 13 7.7e-06 0.0017 20.2 2.9 1 20 254 273 254 275 0.93 5 13 5.4e-05 0.012 17.6 3.4 1 23 286 308 286 308 0.98 6 13 0.0039 0.85 11.7 5.9 1 23 319 341 319 341 0.99 7 13 5.3e-05 0.012 17.6 1.0 1 23 347 369 347 369 0.97 8 13 0.00055 0.12 14.4 4.4 1 23 375 397 375 397 0.98 9 13 7.1e-07 0.00015 23.5 1.1 1 23 403 425 403 425 0.97 10 13 0.00013 0.027 16.4 0.8 1 23 429 451 429 451 0.97 11 13 0.094 21 7.4 3.0 3 21 464 482 462 486 0.90 12 13 0.12 25 7.1 1.7 3 23 494 515 493 515 0.96 13 13 0.00033 0.071 15.1 0.5 1 22 517 538 517 540 0.90
Sequence Information
- Coding Sequence
- ATGGACTACGATTCCGAAAGAAAACTGACAGTGGCATTCAACTGTTGTGCAAGGTCATCTAATTCCAACGAATCCTTGCCTATGGACACAAACAAGAACGGGTTACTACTTAACTCGAAGAGAAATCTACGATCAGCCAGATCAGAGGCGAGTACTACTAAAACCGAGCAGCCTGAGATCAAAAATGATCATTACCTGCTAATGGAAATCAAAGATGGCAAGGAGGAGGACgacattgattttgttttgaccaacACTCCTGCTCAACATGGTATTCGAACGGAATGCCTGGAGGAGATTGAGTTTACCGAGAAAGTGCCAGAGGATGCGGCAAAGAACGGAGATGACAATACAAAAGTACAAACAATCGTCGAGCACATATGTGGAAAGTGTTACCAGTTCTTCCGGTCTATTAAGTCCTTAAAGCGTCACATGGAATATTGCAACTTCAACAGCGACATGATAATGCGCCGCGAGGAAATGCTGAAAAACATTGACAAAATAGAGAAGGAAGCCGCAATCATGGAGAAGAAAGACGTCTGCTTCTGCTGCGGAGATAGCTACGATACCTGCCACCTCGGTCATATAAACTGTGCAGACTGTCCGAAATCATTTAAAACCCAACTGAGCCTCGAGCGCCACGTGTTTCTCATCCATTCGGAAAAGGATGACTTTCCTTGTACCATCTGTAATGGTAAAATTCGAAGCAAAGCTATACTCCAATTGCATATTGATCAGCACAAGAATCGCGGGAAGCCGTTTGCATGCAAGACCTGCGGCAAGGATTTCACGCGAAAGTACCACTTGAAACGTCATGAAAACTTCTCACCGTGTGGCAAGAATCAGTCGGAGTTGTTTAAGTGTAAGGCTTGTGATAGGGTATTCCATCGCTTGGATAATCTACGCTCGCATCTAAAACAACATCTTAATAAGGAGTCTACCAAGAAACAGGAATACAGATGTCCATGCTGTAAAAACTGCTTTTACAGTCTGTCGACGTTGAATATTCACATAAGAACCCATACGGGGGAGAGGCCGTTCGATTGTGACTTGTGCGAAAAGAACTTCCCGTCATTGGTTTCGCTGAAAAAACATCGGAGGTATCATACGGGCGAAAAGCCGTATTGCTGCTCTGTGtgtAATCAACACTTTGCCGTCAAGGAGGTGCTGAACAGGCATATGAAACGACACACTGATGATAAGCCTCATGTTTGCAGTGAATGCGGAAAGCGTTTCATTCAAGCAACTCAACTCAAGAAGCATGTTAACGTCCATCGACGACCATTCGAGTGTTCCATGTGCCCCGAAAAGTTTAAGACACAGAAACAGGCTGAAAAGCACGAGAGAGAGCACAACAAAGCAACCAGAAAACACTTGGGAAAATACTGGTGTCACGACTGTGATATGCAGTATTTCCGTCATGGCTCTCTCATAAAACATGAGCACTCGTTGGAACACATTGAGAAAGCTACGAAATTATGTGAACACTGCAACAAACAATTCGTTGGTATCAAGTCGTTGACCTTTCACATGCTTAAAGAGCACGAATTCAAGTGCAACCAATGCGAAATGGTTTTTGCGAAAAAGGATCTCCTCCGGCAGCACAGCGAAGAAATGCATGGAGCGAACGCTCTCAGACCTTCCGTCGCAGAAGACGATGAAATGATCGTTGATGAATGTACCGAGTCGATCGATGAAAAACCTCAACTTCAGCAACAAAATGAAGCCTGCAGCACCAATGCGCCGATCGTGCTGAAAGTTGAGAATCAAACTCTGGCTAATAGTGTTCAAACGGACCAAGGTTGCTTTGTGATCGAAGAATTTATCGTCGAGGCGCTTCCAGCAGATGAGATGCAAGTACGTTCTGAAAACAAATTGACTGTAAGCCCGCAGACTGGCGAGGTTCTGCCCAAACTGAAAGAAATCAAGAAGCCAGAAAACGAGCGATCCAGAAACCTTAAAGCCGAGTTTAAGAAGCTACTACAAGAAAGCATGGTCGATGATGACGACAAATCACAAATCAACATCAACGACGATATCTTAATCACAAAAAACGTGGGGAAACTATTAGATATGCTTGTGGATGTGAAGACCATTAGCAAATTCGGTTGGCCCGACAAAGACGTTGAAGAGgTTTTGTGCAAAGTTATAGAGAATTGCGGGCATAATCTCAATAGGGACGAATTTGCCGATGACTATGGAACTCGGATGAGAGAATATGTGAAGCTCCTCTTTACCGTCGTGATTCAAAATAACTCAATCGAAGAGCTTCTGAACAACTATACGATAGACGAGGTTATTGAGCTCGTTCTTTCAAACGATGATGTCGATTAA
- Protein Sequence
- MDYDSERKLTVAFNCCARSSNSNESLPMDTNKNGLLLNSKRNLRSARSEASTTKTEQPEIKNDHYLLMEIKDGKEEDDIDFVLTNTPAQHGIRTECLEEIEFTEKVPEDAAKNGDDNTKVQTIVEHICGKCYQFFRSIKSLKRHMEYCNFNSDMIMRREEMLKNIDKIEKEAAIMEKKDVCFCCGDSYDTCHLGHINCADCPKSFKTQLSLERHVFLIHSEKDDFPCTICNGKIRSKAILQLHIDQHKNRGKPFACKTCGKDFTRKYHLKRHENFSPCGKNQSELFKCKACDRVFHRLDNLRSHLKQHLNKESTKKQEYRCPCCKNCFYSLSTLNIHIRTHTGERPFDCDLCEKNFPSLVSLKKHRRYHTGEKPYCCSVCNQHFAVKEVLNRHMKRHTDDKPHVCSECGKRFIQATQLKKHVNVHRRPFECSMCPEKFKTQKQAEKHEREHNKATRKHLGKYWCHDCDMQYFRHGSLIKHEHSLEHIEKATKLCEHCNKQFVGIKSLTFHMLKEHEFKCNQCEMVFAKKDLLRQHSEEMHGANALRPSVAEDDEMIVDECTESIDEKPQLQQQNEACSTNAPIVLKVENQTLANSVQTDQGCFVIEEFIVEALPADEMQVRSENKLTVSPQTGEVLPKLKEIKKPENERSRNLKAEFKKLLQESMVDDDDKSQININDDILITKNVGKLLDMLVDVKTISKFGWPDKDVEEVLCKVIENCGHNLNRDEFADDYGTRMREYVKLLFTVVIQNNSIEELLNNYTIDEVIELVLSNDDVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -