Mequ044565.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- -
- Assembly
- GCA_958301585.1
- Location
- OY284417.1:67432483-67447709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 5.7 1.2e+03 1.7 0.6 2 23 157 179 156 179 0.87 2 19 0.0039 0.84 11.7 3.8 2 19 222 239 221 242 0.92 3 19 8.1 1.8e+03 1.3 1.1 2 23 253 274 252 274 0.87 4 19 0.15 33 6.7 0.0 3 23 283 304 282 304 0.95 5 19 0.011 2.4 10.3 1.5 2 23 311 332 310 332 0.96 6 19 0.0015 0.32 13.0 4.0 1 23 338 360 338 361 0.96 7 19 0.0012 0.27 13.3 6.0 1 23 367 390 367 390 0.95 8 19 0.75 1.6e+02 4.5 0.0 1 20 399 418 399 420 0.82 9 19 0.00027 0.06 15.3 0.1 1 23 437 459 437 459 0.97 10 19 0.0087 1.9 10.6 0.9 1 23 464 486 464 486 0.98 11 19 0.067 15 7.8 0.3 1 23 502 526 502 526 0.95 12 19 1.3e-06 0.00029 22.6 0.8 1 23 532 554 532 554 0.97 13 19 0.12 27 7.0 0.4 1 23 560 583 560 583 0.96 14 19 0.0019 0.41 12.7 0.7 2 23 589 611 588 611 0.93 15 19 2e-06 0.00043 22.1 1.2 2 23 615 637 614 637 0.96 16 19 0.0011 0.23 13.5 0.6 1 23 643 666 643 666 0.95 17 19 0.024 5.1 9.2 3.7 1 23 671 693 671 693 0.98 18 19 0.59 1.3e+02 4.8 10.3 1 23 699 721 699 721 0.92 19 19 0.00012 0.026 16.5 0.3 1 21 727 749 727 750 0.96
Sequence Information
- Coding Sequence
- ATGACCCTTGTCGGCGACTACCAGTTGATCTTCGATGAAATTGGCATTGAATTGAAACTGGACAAACTTCTCGAGGAGTACTTTCAAATCTCTGTCGAGGAAGACTCGTCAACCACTCAGGCCTTATGCGAGGAATGCGTCAACGAATTGACCAAACTGTACGACATCAGTTTGAGGGACCGTCAGGCTGCTTTGGAAGAAAGCCAACCAATAGATTACGACACATTTGATGGTCAGGATTTTATTGTCGAAGTATTAAACGAGGACGATACCATCAATAACGAAACAGTCGGCTCGAGCTCAGTGGATTGTGATTACTTTTCGGAATTCGACGCGAACGTTGCCGAATCATTGGACAGTGGTGATGCAATCCATGTACTAGAGGAAATAGAAAATATCAACACGCACGAATATGTAAAGGATGTCATCAAGAGCGAACTTCAAGAAATCACATTCGAACAGACTACCGTGTGCAGGCTGTGTGATGAGATGCTGAAAAGTcacacggcagtgcttatgcaCACGTCGGAAAACCATGAAACTGATGACAAATCCTACCCGTGCATCATGTGTGATAAGACAGAGGAATTCAAGACAATTAAGGACCTAGCTTACCACATCGTTCTAAAGCATTACGACTTGAAATCAATCACCATATATTGCATGTGTCCCGAATGCGGAAAGCGGTTTTCAAACTTCATCGAGTACAATAAGCACTCCTGCTACAAGAAAACCGTTGGCAATCGACTGTTGCAGGAATGTTTAGTGTGCCTTAAGGAATTCGTATCGAATAAGAGATACCGCTTTCATCTACAATTCCATTTGGAGAAGCGGCGACCGAAGGCCTGCTTCATGTGCGACATACTATTCGCCGATGAAAACGATTTCTTCGAGCACATAATGTACGCCCATGAAAAGAACGACTTGCTTGTGTGTAAAAAATGTGATCGGATCTGTACGTCCATGGAATCTTATGCGAATCACGTAAAGCTTCATGATGCAATCAGGTCGTTCAAGTGTAAATACTGCCCAAAATCATACCTGTACAAACAGATGCTGGTCAACCACATTCAACGACACCACACACAGAAGGAGCATCATATATGCCAGAAGTGCCACAAAGCTCTAGCCAATAAACATCTTCTAACGCGGCATATGCAATTAAAACACGGTGATGATCTCGAAGCAGACGTGTTTGTCTGTTCTGATTGCGGTCTAGTTGGAAAGTCCGAGGAAGCTGCATTGGAACACATTGAGAACGAAGATTGTGCGGATGCCAAGGTGGTAACAGAACACTTGAAGATCGCTTACGCCTGTGAGTATTGCGAAGCGGCCTTCAACAACGTGGATAGTTTGCAAGCTCATTGGAAGAATCACAGtaataaaatgttcatgtgTTGGATATGTTCGAGCGAATATTCGGAATACAAGAAACTCAAGACGCACATTATGACGCACAACAAGTTTGAACCGATACACAAAACCTTTCCAGTAGGCAGGCATTATGTGTGCGATTACATGTCATGTAACAAGTCCTATTTGACGTGGCCAACTTTACGAGCTCACAAAGCTCGACATAAAGCTGACTCCAATTTCATCTGTGAACTGTGTAATCGAACTTTCCGATCACAATCCCTCCTCAATACACATATTAAGGCGCACGAAAACAATGAGGAATATCCATGCCAGTTCTGCCTGAAATTGTGCGCTTCCCAGATGGCATTGGCCGTCCATATCGCCCGGAAGCACAACAACAATTGCATATCGTGTCCACACTGCAAGAACACATATAACAGCGAGGAGTCGCTAAAGGAGCATATCGAATTAAATCACATCAAGCTAACATGCGAGCATTGCGGAAAAGAGACCAAGAATAAACGAAACCTTGAAATCCACATCCGAATGGTCCACTCCAAGATAAAACGATTCTTTTGCGCAACATGTGATAAAGGCTACTATAATAGAGGCGATCTAAAAGTCCACGAAACAACGAACCATTCAGCATCACTTTTCAAATGTGATCACTGCGACTTCACTACTGGATACGAGACGTCGTTCAAAGCGCACACCTTGAAACATGCTTCCACCAAACCGTTCAAATGTGAACACTGTGCCAAGGAATTCACTAGAAAAACTTGTTTTAAACTTCATTGTCTACGTCATTCTGACAACAAACCATTCCATTGTCCAGTCGAGGATTGTGGGAAGCACTTTGTCACAAAGGGAGTTTTAAATACCCATATACGAGACAgggtTGGTAAGGTCGGACGACCACCAAAACGGAAACATGAAAGCGAAAACAACGCAAAAGATGATGGGAACGAGAGTGATTCGAAATATCTTGTGATGGAAATAGATTCTAATAGCATTCCAGTGAAAATAGGTGACGGAAATGATGCCGTTGTGATCTATGAAGAAGTGCAATGGTAA
- Protein Sequence
- MTLVGDYQLIFDEIGIELKLDKLLEEYFQISVEEDSSTTQALCEECVNELTKLYDISLRDRQAALEESQPIDYDTFDGQDFIVEVLNEDDTINNETVGSSSVDCDYFSEFDANVAESLDSGDAIHVLEEIENINTHEYVKDVIKSELQEITFEQTTVCRLCDEMLKSHTAVLMHTSENHETDDKSYPCIMCDKTEEFKTIKDLAYHIVLKHYDLKSITIYCMCPECGKRFSNFIEYNKHSCYKKTVGNRLLQECLVCLKEFVSNKRYRFHLQFHLEKRRPKACFMCDILFADENDFFEHIMYAHEKNDLLVCKKCDRICTSMESYANHVKLHDAIRSFKCKYCPKSYLYKQMLVNHIQRHHTQKEHHICQKCHKALANKHLLTRHMQLKHGDDLEADVFVCSDCGLVGKSEEAALEHIENEDCADAKVVTEHLKIAYACEYCEAAFNNVDSLQAHWKNHSNKMFMCWICSSEYSEYKKLKTHIMTHNKFEPIHKTFPVGRHYVCDYMSCNKSYLTWPTLRAHKARHKADSNFICELCNRTFRSQSLLNTHIKAHENNEEYPCQFCLKLCASQMALAVHIARKHNNNCISCPHCKNTYNSEESLKEHIELNHIKLTCEHCGKETKNKRNLEIHIRMVHSKIKRFFCATCDKGYYNRGDLKVHETTNHSASLFKCDHCDFTTGYETSFKAHTLKHASTKPFKCEHCAKEFTRKTCFKLHCLRHSDNKPFHCPVEDCGKHFVTKGVLNTHIRDRVGKVGRPPKRKHESENNAKDDGNESDSKYLVMEIDSNSIPVKIGDGNDAVVIYEEVQW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -