Mequ028327.1
Basic Information
- Insect
- Merodon equestris
- Gene Symbol
- -
- Assembly
- GCA_958301585.1
- Location
- OY284415.1:32683179-32685409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0024 0.52 12.4 0.6 1 23 138 161 138 161 0.97 2 13 0.00042 0.092 14.7 0.5 3 23 168 189 167 189 0.96 3 13 6e-06 0.0013 20.6 3.1 2 23 199 221 199 221 0.97 4 13 5.8e-07 0.00013 23.8 4.2 1 23 349 371 349 371 0.98 5 13 1.6e-05 0.0036 19.2 3.2 1 23 377 399 377 399 0.98 6 13 0.00029 0.063 15.3 4.6 1 23 405 428 405 428 0.93 7 13 2.1e-07 4.5e-05 25.2 2.4 2 23 438 459 437 459 0.97 8 13 0.00056 0.12 14.4 1.2 2 23 465 486 464 486 0.97 9 13 1.4e-06 0.00031 22.5 0.4 1 23 492 514 492 514 0.96 10 13 2.3e-06 0.00051 21.8 1.5 1 23 520 542 520 542 0.98 11 13 7.2e-06 0.0016 20.3 0.9 3 23 550 570 548 570 0.96 12 13 8.8e-06 0.0019 20.0 4.1 1 23 576 598 576 598 0.99 13 13 0.0011 0.24 13.4 0.6 2 23 604 626 603 626 0.95
Sequence Information
- Coding Sequence
- ATGATTGTCACAGTTGACAGTCGTTTCGATTTCAGTCTAGCAACCAAATCAAATGTAAATATCGCGAATAATATGCGCGATTTTGACATAGATAAAATATGCAGAGTGTGCCTAGAATCGAACACAGAGCTTACCCTACTCTTCGACGAGCAGAATGCTGTCGACGGTGTCTCCCTTCCGGACATGATATCTGAATGCACGGTGTACAAAGCTCTTCGTCATGATGATTTCCCGCATCTTATTTGCCTCGTCTGTAAGGAGAAGCTACTCAGCGCGTACAATTTCAAGAAGCAATACGAGTACTCACACCGCACTCTTGTTGCTTTTCTGGAGTCAATCAACAAGCTGACTGTGGACATGGCATCCTATATCGCTAACGACAAGGCCATTCAAACCGACGAATCAACCCTCTATCCGTGTGAGAAGTGTAGCGAGAAGTTTATGAGCTACGAGCGATTGAGAGAACACAGGTTAACCGCCCACAGGGGCACTGAGAACTTATGTAGACTGTGCTCGAAGAAGTTTAACAGAATCGCTGACCTAAAAAATCATATGGCTGTGCTGCATCCGGAAATCGGTCACATAACGTCAAACGAGTGCGCGGTGTGCAAGAGAAAATTCACGAGAAAGGAGCACGTCACTCGGCATATGAGAACGGTGCACAGATTTATCGCGGAACAGTGCGACGCCGGCGTGGTGGAAATGAAGACTGACGGCAATGAAAACGAGACGCTTATTGAGGCTGAGATCGACTACGGGAATATGTCTCATGCACGACCTGACGTTGAGCTCCTATCTAACTGTGATGCTGCGGAATACCTAGCCATGGACAGTAGTCCATTTACTGCAGAGAATCCTTTCAGCAGTGATGATGATGGAAAGCCCCTATCCGACCTCTTACCAAACAAAAGCAGTTCCAAAGATATAAGCGACCTATTCGTAAAACTAGAGCCCGTCGACCTTAACAACCAGGTTGATATATCCTACGCAGCCGAGTCGGTTGGGGTAAAGCAGGAAGTTATTCCATTTGATATCAAACGAGCGTACAAATGTAGCGAATGCGAAAAAACCTTCACGAGAAGTAGCCACGTGAAGCGACACCTTTTGTCCCATCGTCAGGAAAGGCCGTTCTCATGCACTATTTGCGAACAGCGCTTCAAACGAGCCGATCATCTAAAGCTACATCTCACCAAGCACGACGAAAACAAACGATTTCATTGTGACGGTTGTGATCGATCTTATTGCCGTGCGGATCTATTGAAACGCCACAAGGAACAGAAGCACAGAAGCGATAAGTTGCTCACATCCGATGTATGCAAGCTCTGCAATAAGTCCTTCAGCAGCAAGACGTATTTGCGAAAGCACATGCGCTTACACACAGACAAGAATTGGAAATGCAAATGGTGCTCATTCGATTTCGATTCCAAAGAGGCGCTGAAGCAGCACacaaagtcgcacaatcaagagAAACCCTACCTCTGTTCGGAGTGTGGTTTGAGATTCGTGCGCAACGACTATCTCTTGATACATATGCGACGACACAAGGGGGAGAAGCCATACAAATGCCGGTACTGTGATAAGGGCTTCACGCGGGCAACCGATTTGAACCTTCACGAGAGGTATCACACGGGAGAGAAGACGCACTTGTGTACAACTTGTGGTAAAGGTTTTCAGAGAGCCTACAACCTAGGTGTCCACATGCGAGTACACACGGGAGAACGCCCGTACCAGTGCCCACACTGCCTGAAGAACTTTGCACAATGTAATGATCTGAAAGTGCACATTCGACGTCACACGGGCGAGCGAATCAAATGCGAATTGTGCGGAATTGGGTttgtacaaatgtacaaattAACGCATCACAAGCTCAGCGTACATGGGATAGAGATCGAATCCAGGAACCGTCGAGTGACTAAAGTTCCAATCAAAGACTTGACTATTGTATCGAATCAATAG
- Protein Sequence
- MIVTVDSRFDFSLATKSNVNIANNMRDFDIDKICRVCLESNTELTLLFDEQNAVDGVSLPDMISECTVYKALRHDDFPHLICLVCKEKLLSAYNFKKQYEYSHRTLVAFLESINKLTVDMASYIANDKAIQTDESTLYPCEKCSEKFMSYERLREHRLTAHRGTENLCRLCSKKFNRIADLKNHMAVLHPEIGHITSNECAVCKRKFTRKEHVTRHMRTVHRFIAEQCDAGVVEMKTDGNENETLIEAEIDYGNMSHARPDVELLSNCDAAEYLAMDSSPFTAENPFSSDDDGKPLSDLLPNKSSSKDISDLFVKLEPVDLNNQVDISYAAESVGVKQEVIPFDIKRAYKCSECEKTFTRSSHVKRHLLSHRQERPFSCTICEQRFKRADHLKLHLTKHDENKRFHCDGCDRSYCRADLLKRHKEQKHRSDKLLTSDVCKLCNKSFSSKTYLRKHMRLHTDKNWKCKWCSFDFDSKEALKQHTKSHNQEKPYLCSECGLRFVRNDYLLIHMRRHKGEKPYKCRYCDKGFTRATDLNLHERYHTGEKTHLCTTCGKGFQRAYNLGVHMRVHTGERPYQCPHCLKNFAQCNDLKVHIRRHTGERIKCELCGIGFVQMYKLTHHKLSVHGIEIESRNRRVTKVPIKDLTIVSNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -