Basic Information

Insect: Melolontha melolontha
Gene Symbol: Prdm9
Assembly: GCA_935421255.1
Location: CAKXYX010000289.1:193283-202319[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.6 1.1e+03 3.8 2.0 1 23 381 404 381 404 0.93

2 15 0.0017 0.2 15.6 0.6 1 23 673 696 673 696 0.96

3 15 0.15 17 9.5 2.8 1 23 763 786 763 786 0.97

4 15 0.032 3.7 11.6 0.3 1 23 792 815 792 815 0.96

5 15 0.00055 0.064 17.2 2.0 1 23 821 844 821 844 0.98

6 15 0.051 5.9 11.0 2.6 1 22 850 871 850 873 0.91

7 15 0.0057 0.66 14.0 0.5 1 23 879 902 879 902 0.96

8 15 0.0014 0.16 15.9 2.0 1 23 908 931 908 931 0.97

9 15 0.071 8.3 10.5 0.1 1 23 937 960 937 960 0.96

10 15 0.00026 0.03 18.2 2.8 1 23 966 989 966 989 0.98

11 15 0.023 2.7 12.0 2.2 1 23 995 1018 995 1018 0.95

12 15 0.00063 0.073 17.0 1.1 1 23 1024 1047 1024 1047 0.98

13 15 0.054 6.3 10.9 0.2 1 23 1053 1076 1053 1076 0.94

14 15 0.64 74 7.5 0.6 1 23 1082 1105 1082 1105 0.95

15 15 2.7e-05 0.0032 21.3 2.3 1 23 1111 1134 1111 1134 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.6	1.1e+03	3.8	2.0	1	23	381	404	381	404	0.93
2	15	0.0017	0.2	15.6	0.6	1	23	673	696	673	696	0.96
3	15	0.15	17	9.5	2.8	1	23	763	786	763	786	0.97
4	15	0.032	3.7	11.6	0.3	1	23	792	815	792	815	0.96
5	15	0.00055	0.064	17.2	2.0	1	23	821	844	821	844	0.98
6	15	0.051	5.9	11.0	2.6	1	22	850	871	850	873	0.91
7	15	0.0057	0.66	14.0	0.5	1	23	879	902	879	902	0.96
8	15	0.0014	0.16	15.9	2.0	1	23	908	931	908	931	0.97
9	15	0.071	8.3	10.5	0.1	1	23	937	960	937	960	0.96
10	15	0.00026	0.03	18.2	2.8	1	23	966	989	966	989	0.98
11	15	0.023	2.7	12.0	2.2	1	23	995	1018	995	1018	0.95
12	15	0.00063	0.073	17.0	1.1	1	23	1024	1047	1024	1047	0.98
13	15	0.054	6.3	10.9	0.2	1	23	1053	1076	1053	1076	0.94
14	15	0.64	74	7.5	0.6	1	23	1082	1105	1082	1105	0.95
15	15	2.7e-05	0.0032	21.3	2.3	1	23	1111	1134	1111	1134	0.98

Sequence Information

Coding Sequence: ATGCCAGAACTGCAAATCGATCGTGGTATATTTTTTAAATCATCTCATGAAATCCCAAAGTTAAAAATGTCTCAAGAAATTGTTAAATTTGATGAGAATAACGCAACGTATTTGGAAAATTTAAGTGATATAAAAGAAGAATTCCGGGATGAATATTATCCAGAAAACAAAGTTTGTGTTTCTGAAACTACTATCACAGATATTAACGTAAGCAATAGTGAATTAAATGAGTGCATCAAGAATGCCGAAATAAGGAAATATGAAACGCTCTCTTTGAATCATGTGAAATCAGATTTACCATCATCTGAAGTAAATGATCCAAAAAGCATCAATGTTAAAATAGAAGATGGAATTTGTCCTTCGGATATACAAATTCAATTCAACAATGAACTGCTTTGTAAGTACATTTGTGTTCTCACCATAACTAATTTTATGCTATCCACATCCATAAAACTTATTAGTTGCAATTATAAATATTATTACAAAAGTCTTTCTTTGGAGACTGTAAAACCACTAATTAAAATGTCGCACATGGGGCACAGTAAAGCGCAACAACTTTACGTCCACGTATACACTTCAGTGTATACGTGGACGCCGGTTGTGCTTGCTTTACTGTGCCCCATGTGCGACATTTTAATTATTTGTAACCACTGCCACGAAGTCTGTCAGGATTATTGCACCAAATGCAGAGTGCTTGTGCATATCTTGAACAAAACACTGTTTCAGGATACATATAACACAGTAAGAGAATTACCAAATTACATCTTAGAAATAAAAGAGTCAATTGGACAATCGGGAATTTTCTCTTTAAAAGTTATACCTGAAAATGTAAGATTTGGTCCTTTCACTGGTCTTAATTCTATAGGACTGCCTTGGAGAATAAAAGGAGGAAGGTTTGTGGTTAGCAATGCTAAATTGGGGGATCTGAATTGGATGCAGTATATAAATCCTGCCAGAAATATTTACGAACAAAATTTATTACCATTTCAACATGAAGGCAAACTATATTATTGTAGCACCCGCAGAATCCAGGAGGGTGAAGAGCTATTGGTATATTTTGGTGAAGAATATGAAGATAATCTACTTAAAAATGTGGAAATGGATTTTGTTCCCATTGCAAAAAAATATGTTGAAAATATATTTGCTTGTACTTTTTGTTGCTTGGGATTCAGTTCGAAGGAATATTTAGCTGAACACAAAACTGTGTATCATAGTGAAACGAAAGAAATGTTTTCTGTTGAAGGGTTAAGACGACGTCGGCCTGTTGTGCTTCTTTGCCAAGTTTTTAAAGAGTTCGACAGTTTAATAAAAGAAGCACAAGAGACAATACAACAAAGTTACAAAATATGGATCAATAAAGAAACACAAAAATGGTATGTCCGACGGAACAACTTAAAATTACATCTCAAACTAGTCCATATGCGGTTATTAGAAGTTCTACACCCGATAAGATTCGACATCATAGACAGGGACATTCGAGAGGAAGTATTACAAAGAAGCCAAGAACAACACAAGACACATTTAAAGAAACTCGATCACCTAAAAACCGGCAAGTTATCTTTAGCATTAAAAAACAATATACCTAACGAAATAACTAGTAACGTCACATTTTATCCACATTTAATAAATCCTAGTACAACATTATTCACAGAATCAGAAACTAAATTACTAGAAAAAGGTTTAAAATACAATCCAAATATCAATAACAATAATGACATCAACAATTTAGTAGTAGACCTAGAAGTAGCCCTACAACCAATAGAAGGACATAATTTAGAGAAAGAAAAAATAAAGAAAATAATAATTTCTAAACTTTATTCGGATTTATTTGTTTGCAGATACTGGGCACTTCGCTCACCGGAAGTTCGCGAGTTAGGAGTAGAAAGGTGTTCGCCTGAAAGGTGCAAAACAAGAAAATGGAAAGGTGAAATATTCAAGTGTACGCTATGTAAGTTCAGGACAATATACGGCGCATACTTCAGGCAACACACTAACCAGCATTACAAGGTGAAAATGTACAAATGTGGAATTTGTCGCAAACGATACAAGGCGAAGGAATCTCTCAAGGCGCACGTGGAAAAAGATCATGGTAACAATGAAGGAGGAGGTATCCAAGAATCCACTACGTGTGACTATTTGAACACAAATACTAGAAATATAAAGAAGAGATCTCCACATTTACATGACGGCGAAAAACAATGTCAATGCACAAAATGCAAATTTCTAACAAGGAACAAATGTCACTTGAAATCACTTATAAAAATGAAACATCTGAACAGAGGCAAATATGAGTGCGCAAATTGCGAATTTAAAACACATCGCGAAGTTTATTTAAAAAGGCACATGAAAATAAAACATCTCATGGAAACTAATTATAAATGCTCAGAATGTGAATTTGAAACAAACTACAAGCCAAGTTTAGAAGCACATATAAAAGCGAAACATCTGAAAAAAGAGGATTATAAATGCACAGAGTGTGAGTATATGTCAAATCGCAAATCTAATTTACAAATGCACGTGAAATCAAAACATCTAAAACAAAAGGATTATAAGTGCACGCAGTGCGAATTCAAGACTAACTACAAGTCATATTTACAAAAACACCTAGGCGCAAAGCACCTGAAACAAAAGGATTATAAATGTGCGCAGTGTGAATTCAAAACAAACTACAAGAGTAGTTTAGAAGCACACATGAACGCAATACATTTTAAAGAAACTGGTTATAAATGCACAGAGTGTGAATACATCACATTCTATAAATCAGACTTAAGAAAACACATAAAAGTAAAACATCTGAAACGAAATGATTACAAATGCACAGAGTGCGAATTCAAGACAAACTACGAGCCAAGTTTAGAAGCACATATAAATGCGGAACATCTGAAAAAAGTGGATTATAAATGCACAGAGTGTGAGTATATGTCATATCGCAAGTCTAATTTACAAAGGCACGTGAAATCAAAACATCTAAAACAAAAGGATTATAAGTGCACAGAGTGTGAATACGTGGCATTTCGCAAGTACACTTTACAAGTCCACATGCACGCCAAACATCTGGAGAAAAAGGATTATAAATGCACCGAGTGTGAATTCAAGACAACCTACAAGTCAAGTTTAGAAGCACACGTAAAAACAATACATCTGAAACAAAAGGATTATAAATGCGCAGAATGTGAATACAGGGCAAATCGCAAGTTAAATTTGCAGGTGCACATAGAAGGAAAACATCTGAAACAAAAGAATTATAAATGCATAGAGTGTGAATACATGTCAAATTATAAATCAGACTTAGGAAAACATATAAAAGCAAAACATTTGAAAGAAAAGGGTTATAAATGCACCGAGTGTGGATACATGTCAAGTCGCAAGTCATATTTACAAACACACATAAAGTCAAAACACCTGAAACAAAATGATTTTAAATGCACATAG
Protein Sequence: MPELQIDRGIFFKSSHEIPKLKMSQEIVKFDENNATYLENLSDIKEEFRDEYYPENKVCVSETTITDINVSNSELNECIKNAEIRKYETLSLNHVKSDLPSSEVNDPKSINVKIEDGICPSDIQIQFNNELLCKYICVLTITNFMLSTSIKLISCNYKYYYKSLSLETVKPLIKMSHMGHSKAQQLYVHVYTSVYTWTPVVLALLCPMCDILIICNHCHEVCQDYCTKCRVLVHILNKTLFQDTYNTVRELPNYILEIKESIGQSGIFSLKVIPENVRFGPFTGLNSIGLPWRIKGGRFVVSNAKLGDLNWMQYINPARNIYEQNLLPFQHEGKLYYCSTRRIQEGEELLVYFGEEYEDNLLKNVEMDFVPIAKKYVENIFACTFCCLGFSSKEYLAEHKTVYHSETKEMFSVEGLRRRRPVVLLCQVFKEFDSLIKEAQETIQQSYKIWINKETQKWYVRRNNLKLHLKLVHMRLLEVLHPIRFDIIDRDIREEVLQRSQEQHKTHLKKLDHLKTGKLSLALKNNIPNEITSNVTFYPHLINPSTTLFTESETKLLEKGLKYNPNINNNNDINNLVVDLEVALQPIEGHNLEKEKIKKIIISKLYSDLFVCRYWALRSPEVRELGVERCSPERCKTRKWKGEIFKCTLCKFRTIYGAYFRQHTNQHYKVKMYKCGICRKRYKAKESLKAHVEKDHGNNEGGGIQESTTCDYLNTNTRNIKKRSPHLHDGEKQCQCTKCKFLTRNKCHLKSLIKMKHLNRGKYECANCEFKTHREVYLKRHMKIKHLMETNYKCSECEFETNYKPSLEAHIKAKHLKKEDYKCTECEYMSNRKSNLQMHVKSKHLKQKDYKCTQCEFKTNYKSYLQKHLGAKHLKQKDYKCAQCEFKTNYKSSLEAHMNAIHFKETGYKCTECEYITFYKSDLRKHIKVKHLKRNDYKCTECEFKTNYEPSLEAHINAEHLKKVDYKCTECEYMSYRKSNLQRHVKSKHLKQKDYKCTECEYVAFRKYTLQVHMHAKHLEKKDYKCTECEFKTTYKSSLEAHVKTIHLKQKDYKCAECEYRANRKLNLQVHIEGKHLKQKNYKCIECEYMSNYKSDLGKHIKAKHLKEKGYKCTECGYMSSRKSYLQTHIKSKHLKQNDFKCT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -