Mmel197315.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010005974.1:3407182-3410940[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.069 8 10.6 6.7 1 23 26 49 26 49 0.95 2 13 0.0018 0.21 15.5 0.9 1 23 78 101 78 101 0.96 3 13 0.026 3 11.9 2.7 1 23 107 130 107 130 0.98 4 13 0.00029 0.034 18.1 0.9 1 23 136 159 136 159 0.96 5 13 3.1 3.6e+02 5.4 0.6 1 17 165 181 165 182 0.94 6 13 0.00069 0.08 16.9 1.1 1 23 333 356 333 356 0.96 7 13 0.00025 0.029 18.2 0.6 1 23 362 385 362 385 0.94 8 13 0.074 8.6 10.5 0.3 1 23 391 414 391 414 0.94 9 13 0.0049 0.57 14.2 3.0 1 23 420 443 420 443 0.98 10 13 0.00082 0.096 16.6 3.2 1 23 449 472 449 472 0.97 11 13 0.0033 0.38 14.7 2.4 1 23 478 501 478 501 0.98 12 13 0.39 45 8.2 2.2 1 23 507 530 507 530 0.95 13 13 0.0039 0.46 14.5 1.5 2 23 537 559 536 559 0.95
Sequence Information
- Coding Sequence
- ATGCAATGCAAGTTCAGCACATTGTACAACGCCGACTTCAGGCACCACACTAACCAGCATTGTCAAGTTAAAAAACACAAATGTGGAATTTGTCACAAGAGATACAAAGCGAAGAGATGTCTCAAGGTGCACATAAACGCGAAGCATCTTGGAGAACGAAATTATAAATTCGCAGGATATGAATACAAGACAAACACCAAGTCATATGCAAAACAACTTGAAGAAAATGTTTATAAATGCGCAGAGTGTGAATACAAGGCAAATTACAAGTCAAGTTTGCAAAGACACATAAAAGCAAAGCACCTTAAAGAAAATGATTATAAATGCGCAGAGTGTGAATACAAGACTAATTCCAAGTCATGTTTAGAAGGTCACGTAAAAACAAAACATCTTAAAGAATGCGATTATGAATGCGCAGAGTGTGAATTCAAGACAAACAGCAAGTCAAATTTGCAACGACACATAAAAGCAAAGCATCTCGAAGAAAATGATTATAGATGCGCAGAGTGTGAATTCAAGACGAACAACAAGTCATATTTAACCCTAAACAACCCAGAAGTGTCTGTCGGACACATTTTTAAATTAATTAACGTACTATATTGTAAAATGGCTAAATGTAAAGCTTTGACTGATGAAGAAATTCGGCGTGCTTTAGAAGATAGTGACGATGAAAACTATGTATTCAGAGAAACTAATGACAATGGAGGTGAAGAATTCGTTGTAGACAGCGCTTCTGAAAGTGAAGATGATTTGACAGAAACTGCGTCTGAGATCGATGATGAACAATCATACAACGAGGAGGAAGAAACAATTCAAGAAGAGGAAAGAACAAATCCAAATAATTTAGCCAATGAATACGTGGCTAAAGATGGAACTATTTGGAAAGCACAGCCGGATAAAGCCGGTAGAACTCCACAGCATAATTTAATTTGTGGTGGTATTcataagCCATATTTAAAACAACACATAAAAAGAAAACATCTTAAAGAGAATGATTATAAATGCGCAGAGTGTGAATACAAGACAAACAACAAGTCATATTTAAAAGTACACATAAAAGCAAGGCATATTAAAGAAAATGATTATAAATGCGGAGAATGTGAATTCAAGACAAGCAACAAGTCAAATTTGAAAGTACACATAATTGCAAAACATCTTAAAGAAAATAATTATAAATGCACAGAGTGTGTATTTAAGACAGACAACACGTCAAGTTTGGAAGAACACATAATAGCAAGACATCGGAAACAAAATAATTATAAATGCTCAGAGTGTGAATACAAGACAAACTACAAGCCATATTTAAAACAACACATAAAAAGAAAACATCTTAAAGAAAATGTTTACAAATGCACAGAGTGTGAATTCCAGACAAACAACAAGTCAAATTTGGAACGACACAAAAAATCAAAGCATCTTAAAGAAAATGATTATAAATGCATGAAGTGTGAATTCAAGACAAACAACAAATCATATTTAAAAGTACACATAAATGTAAAACATCTTAAAGAAAATGATTATAGTTGTCCAGAGTGTGAATTCAAGACAAACTACAAATCATGTTTGCAACCGCACATAAAAGCAAAGCATCTTAATGAAAATGATAATAAATGCGCAGAGTGCGAATTCAAGACAAACACAAAGTCAAGTTTACAAAGGCATATAAAAGCAAAGCATCTTAAAGAAAATGATTATAAGTGCAAATTAAATCTATTAATATAG
- Protein Sequence
- MQCKFSTLYNADFRHHTNQHCQVKKHKCGICHKRYKAKRCLKVHINAKHLGERNYKFAGYEYKTNTKSYAKQLEENVYKCAECEYKANYKSSLQRHIKAKHLKENDYKCAECEYKTNSKSCLEGHVKTKHLKECDYECAECEFKTNSKSNLQRHIKAKHLEENDYRCAECEFKTNNKSYLTLNNPEVSVGHIFKLINVLYCKMAKCKALTDEEIRRALEDSDDENYVFRETNDNGGEEFVVDSASESEDDLTETASEIDDEQSYNEEEETIQEEERTNPNNLANEYVAKDGTIWKAQPDKAGRTPQHNLICGGIHKPYLKQHIKRKHLKENDYKCAECEYKTNNKSYLKVHIKARHIKENDYKCGECEFKTSNKSNLKVHIIAKHLKENNYKCTECVFKTDNTSSLEEHIIARHRKQNNYKCSECEYKTNYKPYLKQHIKRKHLKENVYKCTECEFQTNNKSNLERHKKSKHLKENDYKCMKCEFKTNNKSYLKVHINVKHLKENDYSCPECEFKTNYKSCLQPHIKAKHLNENDNKCAECEFKTNTKSSLQRHIKAKHLKENDYKCKLNLLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -