Mmel098935.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010000918.1:26589-29030[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 7.8 9.1e+02 4.1 4.6 1 23 47 69 47 69 0.97
2 18 0.0017 0.2 15.6 0.3 1 23 75 98 75 98 0.96
3 18 0.0022 0.25 15.3 2.4 1 23 163 186 163 186 0.98
4 18 0.087 10 10.2 0.9 1 23 192 215 192 215 0.98
5 18 0.016 1.9 12.6 3.3 1 23 226 249 226 249 0.98
6 18 0.19 22 9.2 1.8 1 23 282 305 282 305 0.98
7 18 0.012 1.3 13.0 2.4 1 23 311 334 311 334 0.98
8 18 0.16 19 9.4 1.1 1 23 340 363 340 363 0.96
9 18 0.17 20 9.3 2.5 2 23 369 391 368 391 0.97
10 18 0.031 3.6 11.7 2.2 1 23 397 420 397 420 0.96
11 18 0.00023 0.027 18.4 0.7 1 23 427 450 427 450 0.98
12 18 0.0013 0.15 16.0 0.8 1 23 456 479 456 479 0.98
13 18 9.4 1.1e+03 3.8 1.8 1 23 485 508 485 508 0.96
14 18 0.015 1.7 12.7 0.8 1 23 514 537 514 537 0.98
15 18 0.085 9.9 10.3 2.5 1 23 543 566 543 566 0.98
16 18 0.0077 0.9 13.6 1.3 1 23 572 595 572 595 0.98
17 18 0.00097 0.11 16.4 2.6 1 23 601 624 601 624 0.98
18 18 0.061 7.1 10.7 0.4 1 23 630 653 630 653 0.96

Sequence Information

Coding Sequence
ATGGCACCTAAATCCGAATATGAAGATTATAAATCACTGGCCCTTGATCACGTTATTGTATTTAAGTGCTTTTTGAATTTAATTCGTATTAATTTGTTTCCAGACACAGCCAAGGCTAAAAGAAGGAAGCGTGGAATATACAAATGTAGACAATGCAAGTTTGAAACAATGTACAACGCCGACTTCAGGCACCACACTAACGAGCACTGCGAGGTGAAAATGTACAAATGTGGAATTTGTAGCAGAAGATATAAGGCGAAGGGATCTCTCAAAGCGCACGTGGAAAAAGTTCATATTGACAGTGAAAGAGGAGATGCCCAAAAATACTCGAGGTGTGACAATTTCAATGCTAATATTAAAAACATAAGACAGAGATCTTTACACTCACGTGCTGATGGAAAACAATGTAAATGTTCAAAATGCAAATTTCAAACGAGGAACAAATGTTACCGAAAATCAAAATTAAAACACCTGAACAGAGGCAAATATAAGTGCGCAAATTGCGAGTATAAGACACGTTACAGGACTTCTCTAGAAAGGCACATGAAAATAAAACATCTCATGGAAAGTAACTATAAATGCGCAAAGTGTGAATTCGAAACAAAGTACATTGGAAATTTAGGAAGACACATAAAGAGAAGACATCTTAAAGAAAACGCGTACAAATGCAATATTTATAAATGTGCAGAGTGTGAATTCAAGACAAACTTCAAGTCGTATTTAAAAAGCCACATAAAAAGAAAACATCTGGAACAATATGATTATACATGCGCAGACCGTGAATTCAAGACAAACGCCAAGCCGGGTTTAAAAATACAAATGAATCTTGAACAAAAAATGAATTATAAATGCCTAGAGTGTGAATTCAAAACAAACGCTGAGCAAAATCTAAAAAAACACGTAAAAAGAAAACATATGGAACAAAATGATTTTAAATGTACAGAGTGTGAATTCAAGACAAATTTCAAGATAGACTTAGAAAGACACATAAAAAGAAAACATATGGAACAAAACGACTATAAATGCGCAGAGTGTGAATTCAAGACAAACTTAAAGTTTGAGTTACAAAGTCACATAAAAGGAAAACATCCGGGGCAAAAAAATAAATGTCTAGAGTGTGAATTCAAAACAAACAGCGAGCAAAATCTAAAAAAACACGTAAAAAGAAAACATATGGAACAAAATGATTTTAAATGTACAGAGTGTGAATTCAAGACAAACTTAAAGTTTGACTTACAAAGACACATAAAAGGAAAACATCTGGAACAAAAAAAGAATTATAAATGCCCAGAGTGTGAATACGAAACAAACATCAAGTCAAACTTGAAAATACATATGAACCGGAAACATCTGGAACAAAATAATTATAGATGTGCAGAGTGTGAATTCGTGACAAACATGAGGTCAAATTTAAAAGCACACATAAAACGAAAACATCTAGAACAAAATGATTATAAATGCGCAGAGTGTGAATTCAAGACACACCTCAAGTCATACTTACCAATACACATAAAACGAATGCATCTGGAACAAAATGATTATAGATGTGCAGAGTGTGAATTCAAGACAAACTTCAAGATAGACTTGGAAAGACACATTAAAAGAGAACATCTGGAACAAAATGATTATAAATGTGCAGAGTGTGAATTCAAGACAAACTTCACGATATACTTAAAAAGACACATAAAAACAAAGCATGTTAAAGAAAAGGCTTATAAATGCATGGAGTGTGAATACCAGACAATTCGAAACTTAGACTTACAAAGGCACATAAAAAGAAAGCACCTGGAACAAAATGATTATAAATGCGCAGAGTGTGAATTCAAGACAAACTTCAAGTCCGACTTGAAAAGACACATAAAAACAAAACACCTGAAACAAAATGATTATAAATGCGCAGAATGTGAATTCAAAACAAACATCAAGTCCAATTTGGATGCGCACATAAAAGCAAAACATCTTAACGGGAAAGATTATAAATGCGCAGAGGCATGTTACAAGTCTGAAATAACTATAAAAGCACGCAAACAAGTAGAAAAGATGAGCGGACACTTTGTCAAGGAGGTAGGGTTTGGAGAATCTCAGGTACGGTCTACATTAACTATAGAGCGTTTCACGCCCATGATGAAGTACAGGCCATATGGAGATAGCGTACATAGTTGCCAAGCCGCGAACTCATTCCTACCAACATACCTATATTGCGGTTAA
Protein Sequence
MAPKSEYEDYKSLALDHVIVFKCFLNLIRINLFPDTAKAKRRKRGIYKCRQCKFETMYNADFRHHTNEHCEVKMYKCGICSRRYKAKGSLKAHVEKVHIDSERGDAQKYSRCDNFNANIKNIRQRSLHSRADGKQCKCSKCKFQTRNKCYRKSKLKHLNRGKYKCANCEYKTRYRTSLERHMKIKHLMESNYKCAKCEFETKYIGNLGRHIKRRHLKENAYKCNIYKCAECEFKTNFKSYLKSHIKRKHLEQYDYTCADREFKTNAKPGLKIQMNLEQKMNYKCLECEFKTNAEQNLKKHVKRKHMEQNDFKCTECEFKTNFKIDLERHIKRKHMEQNDYKCAECEFKTNLKFELQSHIKGKHPGQKNKCLECEFKTNSEQNLKKHVKRKHMEQNDFKCTECEFKTNLKFDLQRHIKGKHLEQKKNYKCPECEYETNIKSNLKIHMNRKHLEQNNYRCAECEFVTNMRSNLKAHIKRKHLEQNDYKCAECEFKTHLKSYLPIHIKRMHLEQNDYRCAECEFKTNFKIDLERHIKREHLEQNDYKCAECEFKTNFTIYLKRHIKTKHVKEKAYKCMECEYQTIRNLDLQRHIKRKHLEQNDYKCAECEFKTNFKSDLKRHIKTKHLKQNDYKCAECEFKTNIKSNLDAHIKAKHLNGKDYKCAEACYKSEITIKARKQVEKMSGHFVKEVGFGESQVRSTLTIERFTPMMKYRPYGDSVHSCQAANSFLPTYLYCG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-