Mmel064398.2
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010000534.1:2196110-2198536[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.6 7.7e+02 4.3 0.0 5 22 2 19 1 19 0.92 2 23 0.0015 0.17 15.8 3.5 1 23 28 51 28 51 0.98 3 23 0.011 1.3 13.0 3.4 1 23 57 80 57 80 0.98 4 23 0.76 88 7.3 3.8 1 23 86 109 86 109 0.98 5 23 0.015 1.8 12.6 1.6 1 23 114 137 114 137 0.96 6 23 7.2e-05 0.0083 20.0 0.7 1 23 143 166 143 166 0.98 7 23 0.00022 0.026 18.4 1.6 1 23 172 195 172 195 0.97 8 23 0.012 1.4 13.0 1.5 2 23 202 224 201 224 0.97 9 23 0.0049 0.57 14.2 1.3 1 23 230 253 230 253 0.98 10 23 0.72 84 7.4 2.9 1 23 259 282 259 282 0.97 11 23 0.0042 0.49 14.4 1.6 1 23 288 311 288 311 0.98 12 23 0.056 6.6 10.8 4.8 1 23 317 340 317 340 0.97 13 23 0.053 6.1 10.9 0.5 1 23 346 369 346 369 0.98 14 23 4.1 4.8e+02 5.0 0.8 1 23 375 398 375 398 0.96 15 23 4.1 4.8e+02 5.0 0.8 1 23 461 484 461 484 0.96 16 23 4.1 4.8e+02 5.0 0.8 1 23 547 570 547 570 0.96 17 23 1.1 1.2e+02 6.8 1.3 1 23 604 627 604 628 0.95 18 23 5.9 6.9e+02 4.5 3.6 1 23 633 656 631 656 0.96 19 23 0.00099 0.12 16.4 4.6 1 23 662 685 662 685 0.98 20 23 0.032 3.8 11.6 1.1 1 23 691 714 691 714 0.98 21 23 0.091 11 10.2 2.7 1 23 720 743 720 743 0.98 22 23 0.0027 0.32 15.0 2.6 1 23 749 772 749 772 0.98 23 23 0.072 8.4 10.5 3.3 1 23 778 801 778 801 0.98
Sequence Information
- Coding Sequence
- ATGGAGTGTGAATACAAAACTAATTACAAGTCTAGTTTAGAAGCACACGCGAAAACACGCCAACTCAAGAAAAAAAACTATTATTATTGCACGAACTGTGACTTCAAGACAACCTATAAACGTAATTTAGAAAGGCATACAAAAACGATACATATTAAAGAAGACGATTATAAATGCAATGAGTGTGAATTCAGGACATACTACAAGTCATGTTTAGAAGCACACATCAAAGTAAAACATCTTAAAGAAAGCTATTATAAATGCATGGAGTGCGATTTCAATACGAACTGCAAATCATATTTAAAAGTACACATAAAAGTAAAACATCTTGATAATTATTATAAATGCACGGAATGCGCGTATAAGACTAACTACAAATCAAGTTTAAAAATACATGTGAAAGCAAAACATCTCAAGGAAAGGGATTATAAATGCCCGGAATGTGAGTATAAGACAAGCTATAAATCAGGTTTAGAAGTACACATAAAGACGAAACATGCTAAAGAAAACGATTACAAGTGCAAGGAATGTGATTACAAGACGAACAGCAAGTCAAATTTAGGAAGGCACGTACAAATAAAACATCTTAAAGAAAGCGATTTAAAATGCACGGAGTGTGAATACAAAACAAACAGCAAGTTAAATTTAGGAAGGCACATAAAAACGAAACATCTTAGAGAAAACGATTATAATTGTAAGGAGTGTGAATTCATGACAAATTACAAGTCGACTTTAGAAGCACACGTCAAAACCAAACATCTTAATGAAAGCGATTACAAGTGCATCGAGTGTGAATTCAAGACAAACTATAAGTCAAAGTTAAAAACTCATGTGCAAACGAAACATCTTAAAGAAAGCGACTTTAGATGTATGGAATGTGAATTCAAGACAAACTACAAGTCAAATTTGGAAGCACACGTGAAAACAAAGCATCTTAAAGTAAACGATTATAATTGCATGGAGTGTGAATACAAGACAAATTACAGACAACATTTGAAAAAACACATTAAAATGAAACATCTTAAAGAAGGTGACTATAAATGTATGGAGTGCGAATTCAAGACAAAGAGCATGGTAGATTTAGAAGCACACGTAAATACAAAACATCTTAAAGAAAGTAATTACAAGTGCATCGAGTGTGAATACAAGACAAACCACATGTTAGATTTGGAAGCACACGTTAATACACAACATCTTAATGAAAGCAATTATAACATCAAGTGTGAATTCAAGACAAACCACATGTTAGATTTAGAAACTCACGTGGATACAAAACATCTTAAAGAAAGTGATTATAAGTGCATCGAATGTGAATACAAGACAAATTACATGTTAGATTTAGAAGCACATGTAAAACTGAACCATCTTAAAGAAGGTGATTACAAGTGCATCGAGTGTGAATACAAGACAAATCACATGTTAGATTTAGAAGCACACGTTAATACACAACATCTTAATGAAAGCAATTATAACATCAAGTGTGAATTCAAGACAAACCACATGTTAGATTTAGAAACTCACGTGGATACAAAACATCTTAAAGAAAGTGATTATAAGTGCATCGAATGTGAATACAAGACAAATTACATGTTAGATTTAGAAGCACATGTAAAACTGAACCATCGTAAAGAAAGTAATTACAAGTGCATCGAGTGTGAATACAAAACAAACCACATGTTAGATTTGGAAGCACACGTTAATACACAACATCTTAATGAAAGCAATTATAACATCAAGTGTGAATTCAAGACAAACCACATGTTAGATTTAGAAACTCACGTGGATACAAAACATCTTAAAGAAAGTGATTATAAGTGCATCGAATGTGAATACAAGACAAATGACAAGCTAGATTTAGAGGCTCACTTAAAACTAAAACATCATAATGAATGTGATTACAAATGCATCGAGTGTGAATACAAGACAAATTATAAATATGTTTTAAACAAACACGTAAAATCGAAACATCTTAACGAATGTGATTATAAATGCAAAGAGTGTAAGTACAAGACAAATTATAAGTCGAAGCTAAAGGTACACATAAAAACGAAACATCTTAAGGAAAGCGACTATAAATGTGTAGAGTGTGAATTCAAGACAAACTACAAGTTAAATTTAGAAGCACACGTAAAAACGAAACATCTTAAAGAATGCGATTATAAGTGCTTGGAATGCGAGTACAAGACAAATTATAAGGCAAAGTTTAAAGTACACGTTAAAACTAAACATCTTAAAGAAAGCGACTATAAATGTACGGAGTGCGAATTTAAAACAAATTACAAGTCAAATTTTGAAGCACACGTGAAAACAAAACATCTTAAAGAAAGTGATTATAAGTGCATGGAGTGTAAATTCGAGACAAATTATAAATCAAAGTTAAAAGTACACGTCAAAAGGAAACATCTTAAGGAAAGCATTTGTAAATGA
- Protein Sequence
- MECEYKTNYKSSLEAHAKTRQLKKKNYYYCTNCDFKTTYKRNLERHTKTIHIKEDDYKCNECEFRTYYKSCLEAHIKVKHLKESYYKCMECDFNTNCKSYLKVHIKVKHLDNYYKCTECAYKTNYKSSLKIHVKAKHLKERDYKCPECEYKTSYKSGLEVHIKTKHAKENDYKCKECDYKTNSKSNLGRHVQIKHLKESDLKCTECEYKTNSKLNLGRHIKTKHLRENDYNCKECEFMTNYKSTLEAHVKTKHLNESDYKCIECEFKTNYKSKLKTHVQTKHLKESDFRCMECEFKTNYKSNLEAHVKTKHLKVNDYNCMECEYKTNYRQHLKKHIKMKHLKEGDYKCMECEFKTKSMVDLEAHVNTKHLKESNYKCIECEYKTNHMLDLEAHVNTQHLNESNYNIKCEFKTNHMLDLETHVDTKHLKESDYKCIECEYKTNYMLDLEAHVKLNHLKEGDYKCIECEYKTNHMLDLEAHVNTQHLNESNYNIKCEFKTNHMLDLETHVDTKHLKESDYKCIECEYKTNYMLDLEAHVKLNHRKESNYKCIECEYKTNHMLDLEAHVNTQHLNESNYNIKCEFKTNHMLDLETHVDTKHLKESDYKCIECEYKTNDKLDLEAHLKLKHHNECDYKCIECEYKTNYKYVLNKHVKSKHLNECDYKCKECKYKTNYKSKLKVHIKTKHLKESDYKCVECEFKTNYKLNLEAHVKTKHLKECDYKCLECEYKTNYKAKFKVHVKTKHLKESDYKCTECEFKTNYKSNFEAHVKTKHLKESDYKCMECKFETNYKSKLKVHVKRKHLKESICK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -