Mmel143643.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001572.1:603262-606332[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.5 2.9e+02 5.7 5.1 1 23 36 58 36 58 0.98 2 23 0.00032 0.037 17.9 3.9 1 23 64 87 64 87 0.97 3 23 4.2 4.9e+02 4.9 5.3 1 23 153 176 153 176 0.97 4 23 0.018 2.1 12.4 2.0 1 23 240 263 240 263 0.97 5 23 0.12 14 9.8 1.9 1 23 299 322 299 322 0.98 6 23 0.0085 1 13.4 3.8 1 23 328 351 328 351 0.98 7 23 0.021 2.5 12.2 2.6 1 23 357 380 357 380 0.97 8 23 0.0056 0.65 14.0 3.6 1 23 386 409 386 409 0.97 9 23 0.0073 0.85 13.6 3.1 1 23 414 437 414 437 0.98 10 23 0.014 1.7 12.7 2.2 1 23 443 466 443 466 0.97 11 23 0.021 2.4 12.2 1.6 1 23 472 495 472 495 0.97 12 23 0.035 4.1 11.5 2.0 1 23 500 523 500 523 0.98 13 23 3.7 4.4e+02 5.1 2.3 1 23 529 552 529 552 0.96 14 23 0.018 2.1 12.4 1.5 1 23 558 581 558 581 0.98 15 23 0.012 1.4 12.9 3.3 1 23 587 610 587 610 0.98 16 23 0.38 44 8.2 2.6 1 23 616 639 616 639 0.98 17 23 3.9 4.6e+02 5.0 6.2 1 23 674 697 674 697 0.97 18 23 0.0073 0.85 13.6 3.1 1 23 702 725 702 725 0.98 19 23 0.021 2.5 12.2 2.6 1 23 731 754 731 754 0.97 20 23 0.01 1.2 13.1 2.4 1 23 760 783 760 783 0.97 21 23 0.004 0.47 14.4 1.5 1 23 788 811 788 811 0.98 22 23 0.1 12 10.0 1.2 1 23 817 840 817 840 0.95 23 23 0.0013 0.15 16.0 2.3 1 23 846 869 846 869 0.96
Sequence Information
- Coding Sequence
- ATGACCAGTCCTTTGATTTGGGCGCCTGTGTGCCTTGTTCACGAGTTAGGAGTAGAAAGGTGTTCGTCTGAGAGACGCAAAGTTATAAAATGGAAACGTAGAATATTCAAATGTACGCAATGCAAGTTTAGGACAAAATACGGCGCCGACTTCAGACACCACACTAACGTGCATTGCGAGGTGAAAATATACAAATGTGGAATTTGTCACAGGAGATACAAGACGAAGGAATCGCTCAAGACGCACGTGTTAAAGAATCATGTTAAAGATGAAGTAAGGGGTATCCAAAAATACACTACGTGTGACTATTTCAAAGCAAATATTAGAAATATAAAGGAGAGAACTCCACGCTCACATGGTGAAAAACAACGTCAACGCGCGAAGTGCAAATTTCAAACGAGGAATAAACCTCGCTTAAAATTACTTGTCAGAAGGAAACATCTGAACAGAAGGAAATATAAGTGCTCAAATTGCGAATTTAAGACATATTGCAGGAGTTATTTAGAAAAACACATCAAAATAAAGCATCTCATGGAAACTAATTATAAATGCTCAGAGCGTGAATACGAAACAGACTATAAGTCAAGTTTAGTAGGACATAAAAACGCAAACCATTTTAAACAAAAGGATTATAGATGCGCCGAGGGTGAATTCAACACAAACAAAAAATCATATCCAAACAAACCTACGAAAGCAAAACATCTCAAAGAAAATGCTTATAAATGCATGGAATGTGAATTCAAGACAAACGACAAGTCTAGCTTGGAAACTCACAAAAAAATAAAACATCTTAAAGAAAAAAAATATTATAAATGCGTGGAGAGTGAGTTCAAGACGAACTACAAGTCAATTTTAAAAAGACACATGAACATAAAACATCTTAAAGAAATGAATTATAAATGCATGGAGTGTGAATTCAAGACAAGCGACAAGGCATTTTTAAAAGGACACTTGAAAAGAAAACATCTTAAAGAAATTAATTATAAATGCATGGAGTGTGAATACAAAACATATTACAAGTCACATTTAGAAACACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATTCAAGACAAGCAACAAGGCATATTTAAAACAACACGTGAAAATAAAACATCTTAAAGAAATTCATTATAAATGCGCGGAGTGTGAATTCAAGACATACTACAAGTCACATTTAGAAAAACACATAAAAGTAAAACATACACAAGATGATTATAAATGCGTGGAGTGCGAATTCAAGACGAACTACAAGTCACATTTAGAAACACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCGTGAAGTGTGAATTCAAGACAAGCAACAAGGCATATTTAAAACAACACGTGAAAATAAAACATCTTAAAGAAATTCATTATAAATGCGCGGAGTGTGAATTCAAGACATACTACAAGTCACAATTAGGAAAACACATAAAAGTAAAACATACACAAAATGATTATAAATGCGTGGAGTGCGAATTCAAGACGAACTACAAGTCAACTTTCGAAGCACACGTAAAAACAAAACATCTTAATGAAAATGACTATAAATGCATTGAGTGTGAATTCAAGACAAACAACAAGTCATTTTTAAAAGGACACGTGAAAAGAAAACATCTGAAACAAGAGGTTTATAGATGCGCAAACTGTGAATTCAAGACAAACTACAAGTCAACTTTAGAAGCACACGTAAAAACAAAACATCTTAATGAAAATGAGTATAAATGCACGGAGTGTGAATTCAAGACAAACATCAAGTCATATTTAAAACGGCACGTGAAAACAAAACATCTGAAACAAGAGGATTATAAATGCGTGGAGTGTGAATTCAAGACAAACATCAAGTCATTTTTAACAAAACACGTTAAAAGAAAACATCTTAAAGGAATTGATTATAAATGCATTGAGTGTGAATTCAAGACAAACTGCAAGTCATATTTAAGTAGCCACGTGAAAATAAAACATCTTAAAGAAATTGATTATAAATGCATGGGGTGTGAATTCAAAACATACTGCAAGTCACATTTAGAAAAACACATAAAAGTAAAACATACACAAAATGATTATAAATGCGTGGAGTGCGAATTCAAGACAAACTACAAGTCACATTTAGAAACACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATTCAAGACAAGCAACAAGGCATATTTAAAACAACACGTGAAAATAAAACATCTTAAAGAAATTCATTATAAATGCACGGAGTGTGAATTCAAGACATACTACAAGTCACAATTAGGAAAACACATAAAAGTAAAACATACACAAAATGATTATAAATGCGTGGAGTGCGAATTCAAGACAAACTACAAGTCAGGTTTAGAACGGCATATAAAATCAAAACATCTTAAAGCAAATGATTATAAATGCATCGAGTGTGAATTCAAGACAAACACCAAGTCATATTTACAAGTGCATATAAAAGCAAAACATCTTAAAGGAAATGATTATCAATGCATGGAGTGTGACTACAAGACGAAGTACAAGTCAAACTTAGAGAGTCATAGAAAAGCAAAACATTTTAATAAAAATTAG
- Protein Sequence
- MTSPLIWAPVCLVHELGVERCSSERRKVIKWKRRIFKCTQCKFRTKYGADFRHHTNVHCEVKIYKCGICHRRYKTKESLKTHVLKNHVKDEVRGIQKYTTCDYFKANIRNIKERTPRSHGEKQRQRAKCKFQTRNKPRLKLLVRRKHLNRRKYKCSNCEFKTYCRSYLEKHIKIKHLMETNYKCSEREYETDYKSSLVGHKNANHFKQKDYRCAEGEFNTNKKSYPNKPTKAKHLKENAYKCMECEFKTNDKSSLETHKKIKHLKEKKYYKCVESEFKTNYKSILKRHMNIKHLKEMNYKCMECEFKTSDKAFLKGHLKRKHLKEINYKCMECEYKTYYKSHLETHIKVKHLKANDYKCMKCEFKTSNKAYLKQHVKIKHLKEIHYKCAECEFKTYYKSHLEKHIKVKHTQDDYKCVECEFKTNYKSHLETHIKVKHLKANDYKCVKCEFKTSNKAYLKQHVKIKHLKEIHYKCAECEFKTYYKSQLGKHIKVKHTQNDYKCVECEFKTNYKSTFEAHVKTKHLNENDYKCIECEFKTNNKSFLKGHVKRKHLKQEVYRCANCEFKTNYKSTLEAHVKTKHLNENEYKCTECEFKTNIKSYLKRHVKTKHLKQEDYKCVECEFKTNIKSFLTKHVKRKHLKGIDYKCIECEFKTNCKSYLSSHVKIKHLKEIDYKCMGCEFKTYCKSHLEKHIKVKHTQNDYKCVECEFKTNYKSHLETHIKVKHLKANDYKCMKCEFKTSNKAYLKQHVKIKHLKEIHYKCTECEFKTYYKSQLGKHIKVKHTQNDYKCVECEFKTNYKSGLERHIKSKHLKANDYKCIECEFKTNTKSYLQVHIKAKHLKGNDYQCMECDYKTKYKSNLESHRKAKHFNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990396;
- 90% Identity
- -
- 80% Identity
- -