Mmel142551.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001545.1:34475-37258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.77 90 7.3 4.5 1 23 61 83 61 83 0.97 2 15 0.00088 0.1 16.5 1.1 1 23 89 112 89 112 0.96 3 15 4.4 5.2e+02 4.9 4.5 2 21 149 168 148 169 0.95 4 15 0.4 46 8.2 4.6 1 23 177 200 177 200 0.96 5 15 0.0019 0.22 15.5 4.9 1 23 206 229 206 229 0.98 6 15 0.0016 0.19 15.7 1.3 1 23 235 258 235 258 0.98 7 15 0.00035 0.04 17.8 1.9 1 23 264 287 264 287 0.98 8 15 0.0076 0.88 13.6 2.4 1 23 293 316 293 316 0.98 9 15 0.00063 0.074 17.0 1.8 1 23 334 357 334 357 0.98 10 15 0.00021 0.024 18.5 1.6 1 23 363 386 363 386 0.96 11 15 0.0005 0.058 17.3 2.5 1 23 392 415 392 415 0.98 12 15 0.0038 0.45 14.5 0.9 1 23 421 444 421 444 0.98 13 15 0.0023 0.27 15.2 0.5 1 23 450 473 450 473 0.98 14 15 0.0027 0.32 15.0 0.7 1 23 479 502 479 502 0.96 15 15 0.26 30 8.8 0.0 4 23 510 530 510 530 0.96
Sequence Information
- Coding Sequence
- ATGCAAGGTGTCACCTACCGGATTAGTAAAATCATTCTTAAACAAAAACGCCTAAATCTTCAAGCCCCCACTCCACACTCTCGAAACTATTTTCTGTTAAAAACTGTGATCGCTCACGAGGTAGAAACAGAAACGCGTTCCACTCTCAGAAGGAAAGTCCATAAATGGAAGCGTGAAATATACAAATGTACGCGATGCAAGTTCAGAACAATGTACAAAGCAGACCTCAGACACCACGCTAAAGAGCACTACATGGTGAAAATGTACAAGTGTGGAATCTGTCACAGAAGATACAAGGCGAAGGCATCTCTCAAGGCGCACGTGGAAAAAATTCATGACAATGAAGGAGATGTCGAGGAACATTCCAGGTGTGACTATTTCAAAGCTAATACTAGGAATATGAAAGGGAGATCTCCACATTCACATGTTGGTGGAAGACAAAGTCAATGCTCGAAATGCAAACTTCAAGCAAAGAAAAAATGTCACTTAAAGTCACATATAAAAATAAATCAACCGAACAGAGGAAAATATAAGTGCGTACATTGCGAGTTTAAGACATATTCCAGGTCTTATTTAGAAATGCATACGAAATTGAAACATCTCATGGAAATTGATTATAAATGCAGGGAGTGTGAATTCAAGACAAGCTACAAGCATAATTTAGAAAGACACATACAAACAAAACATCTGAAAGAAAAGAATTATAAATGCACAGAGTGTGAATACAAAGCAAGTAACAGCTCACGTTTAAAAGCACACGTGAAAACGAAACATCTTAAACAATATAATTATAAATGCGGAGAGTGTGAATTTAAAACAAACAACAAGTCTAATTTAGAGTATCACATCAAGACAAAGCATCTTAAAATAAGCGATTATAAATGCGCGGAATGTAAATACCAAACAAACAAGCAGTATTATTTAGAGATGCACATAAAGACAAAGCATCTTaaaataagcgattataaatgtgcagaatTACATCTTAAAATAAGAGATTATATATGTACCGAATGTGAATACAAGGCAAGCCACAAGTCTGAGTTAGTAAAACACATAAAGACAAGGCATCTTAAAATAAGCGATTATAAATGCGCAGAATGTGAATACAAGACAAACAACAAGTCACATTTAGAAAAACACATAAAGGCAATACATCTTAAACTAGCCGATTATAAATGTGCAGAGTGTGAATACAAGACAAACCATAAGACAAGTTTAGAAAGACACATAAAGACAATACATCTTACAATAAAAGATTATAAATGCGCAGACTGTGAATACAAGACAAACGAGAAGAGAAGCTTAGAAATACACATAAAGACAAAACATCTAAAAAAATGCGATTATAAATGCGCAGAGTGTGAATTCGAGACGAACTATAAGTCAAGTTTAGAGATGCACATAAAGACAATACATCTTAAGATAAGGGCTTATAAGTGCGTAGAGTGTGAATACAACACAAACAGGAAGAAAAGTTTAGTAAAACACATAAAGGCAATACATCCTACAATAAGAGATAAATCTCCGGAGTGTGGATATATGACAAATTACAAGTCAGTGTTAGTAAAACACGTAAAAACAGAACACGATTGCGAATGTGCAGAGTATGAGTACAAGACAAACTACACGTCTAGTTTAAAAACCCACATAATAGGAAAAGATCTTAAAGTAAACGAATTTAAATGCGAGATTTTAGAGTGTGAATACAAGACAGCAATTAAAAATGTAGCCCGAACAGTAGCTTTGAACGAAGATGCCCACAGTATTCAATACATCGATGCTGTCTTGAATATTCTCAGGAGTACCGTCCAAGACGCAATACACCGACATCGTCAAACTGGGGAATCCACAAGAAGGTCAGGATCAGGCAGACCTAGCACCGCAAACCGGGGAGAAGACCGTTTTATGGTGTTATCTACACTACGAGATCGTGGTTTACAATCAACGATTGTGCAGTGA
- Protein Sequence
- MQGVTYRISKIILKQKRLNLQAPTPHSRNYFLLKTVIAHEVETETRSTLRRKVHKWKREIYKCTRCKFRTMYKADLRHHAKEHYMVKMYKCGICHRRYKAKASLKAHVEKIHDNEGDVEEHSRCDYFKANTRNMKGRSPHSHVGGRQSQCSKCKLQAKKKCHLKSHIKINQPNRGKYKCVHCEFKTYSRSYLEMHTKLKHLMEIDYKCRECEFKTSYKHNLERHIQTKHLKEKNYKCTECEYKASNSSRLKAHVKTKHLKQYNYKCGECEFKTNNKSNLEYHIKTKHLKISDYKCAECKYQTNKQYYLEMHIKTKHLKISDYKCAELHLKIRDYICTECEYKASHKSELVKHIKTRHLKISDYKCAECEYKTNNKSHLEKHIKAIHLKLADYKCAECEYKTNHKTSLERHIKTIHLTIKDYKCADCEYKTNEKRSLEIHIKTKHLKKCDYKCAECEFETNYKSSLEMHIKTIHLKIRAYKCVECEYNTNRKKSLVKHIKAIHPTIRDKSPECGYMTNYKSVLVKHVKTEHDCECAEYEYKTNYTSSLKTHIIGKDLKVNEFKCEILECEYKTAIKNVARTVALNEDAHSIQYIDAVLNILRSTVQDAIHRHRQTGESTRRSGSGRPSTANRGEDRFMVLSTLRDRGLQSTIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -