Mmel132643.1
Basic Information
- Insect
- Melolontha melolontha
- Gene Symbol
- -
- Assembly
- GCA_935421255.1
- Location
- CAKXYX010001382.1:33355-36499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.2 2.6e+02 5.8 5.1 1 23 28 50 28 50 0.98 2 20 0.00028 0.033 18.1 3.9 1 23 56 79 56 79 0.97 3 20 0.038 4.4 11.4 2.9 1 23 142 165 142 165 0.97 4 20 0.028 3.3 11.8 2.4 1 23 229 252 229 252 0.97 5 20 0.038 4.5 11.4 4.0 1 23 258 281 258 281 0.97 6 20 0.0075 0.87 13.6 4.2 1 23 287 310 287 310 0.97 7 20 0.013 1.5 12.9 2.3 1 23 316 339 316 339 0.96 8 20 0.0012 0.14 16.1 3.7 1 23 345 368 345 368 0.98 9 20 0.0032 0.37 14.8 2.8 1 23 374 397 374 397 0.96 10 20 0.0032 0.37 14.8 3.0 1 23 403 426 403 426 0.98 11 20 0.013 1.5 12.9 2.3 1 23 432 455 432 455 0.96 12 20 0.0097 1.1 13.2 3.0 1 23 498 521 498 521 0.96 13 20 0.0023 0.27 15.2 2.0 1 23 527 550 527 550 0.98 14 20 0.0048 0.56 14.2 3.5 1 23 556 579 556 579 0.98 15 20 0.011 1.3 13.0 3.9 1 23 585 608 585 608 0.98 16 20 9.8 1.1e+03 3.8 1.4 1 23 614 637 614 637 0.95 17 20 0.00044 0.051 17.5 1.3 1 23 671 694 671 694 0.98 18 20 0.011 1.2 13.1 1.1 1 23 700 723 700 723 0.96 19 20 2.6 3e+02 5.6 1.3 1 23 729 752 729 752 0.94 20 20 0.0033 0.38 14.7 2.4 1 23 758 781 758 781 0.96
Sequence Information
- Coding Sequence
- ATGGGACATTCGCTACCTAAAGACGGAGTAGAAAGGTGTTCGTCTGAGAGACGCAAAGTTAGAAAATGGAAACGTAGAATATTCAAATGTACGCAATGCAAGTTTAGGACAAAATACGGCGCCGACTTCAGACACCACACTAACGTGCATTGCGAGGTGAAAATATACAAATGTGGAATTTGTCACAGGAGATACAAGACGAAGGAATCGCTCAAGACGCACGTGCTAAAAAATCATGTTAAAGATGAAGTAAGGGGTATCCAAAAATACACTACGTGTGACTATTTCAAAGCAAATATTAAAGAGAGATCTCCACGCTCACATGGTGAAAAACAACGTCAACGCGCGAAGTGCAAATTTCAAACGAGGAACAAACTTCGCTTAAAATCACTTGTCAGAAGGATACATCTGAACAGAAGGAAATATAAGTGCTTAAATTGCGAATTTAAGACATATTACAGGAGTTATTTAGAAAAGCACATCAAAATAAAGCATCTCATGGAAACTAATTATAAATGCTCAGAGCGTGAAAACGAAGGAAACTATAAGTCAAGGTTAGTAGGACATAAAAACGCAAACCATTTTAAACAAAAGGATTGTAGATGCGCCGAGGGTGAATTCAACACACACAAAAAATCATATCCAAGCAAACCCATGAAAGCAAAACATCTTAAAGAAAATGCTTATAAATGCATGGAGTGTGAATTCAAAACATACTACAAGTCTAGCTTGGAAAGACACAAAAATGTAAATCATCTTAAAGAAATTGATTATAAATGCATGGAGTGTGAATTCAAAACATACCACAAGTCTAGCTTGGAAAGACACAAAAATATAAATCATCTTAAAGAAATTGATTATAAATGCATGGAGTGTGAATTCAAAACATACTACAAGTCACATTTGGAAAGACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATACAAGACAAACTACAAGTCATATTTAAAAGTGCACATAAACGCAAAACATGTTAATGACAATGAGTATAAATGCATGGAGTGTGAATACAAGACAAACTACAAGTCACATTTAGAAAGACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATTCAAGACAAGCGACAAGTCACATTTACAAGTGCATATAAACGCAAAACATGTTAATGACAATGAGTATAAATGCGTGGAGTGCGAATTCAAGACAAACTACAAGTCACATTTAGCAAGACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATACAAGACAAACTACAAGTCATATTTAAAAGTGCATATAAACGCAAAACATGTTAATGACAATGAGTATAAATGCATGGAGTGTGAATACAAGACAAACTACAAGTCATATTTAAAAACAAACTACAAGCCACATTTAGAAAGACACATAAAAGTCAAACATCTCAAAGCAAATGATTATAAATGCATGAAGTGTGAATACAAGACAAACTACAAGTCAAACTTAGAAAATCACAGAAAAGCAAGACATCTGAATGAAATGGATTATAAATGCACGGAGTGCGAATTCAAGACGAACTACAAGTCAACTTTAGAAGCACACGTAAAAACAAAACATCTTAATGAAAATGAGTATAAATGCATGGAGTGTGAATTCAAGACAAACTACAAGTCACATTTAGCAAGACACATAAAAGTCAAACATCTCAAAGAAAATGATTATAAATGCATGGAGTGTGAATACAAGACAAACTACAAGTCATATTTAAGTAGGCACCTGAAAAGAAAACATCTTAAAGGAAATGATTATAAATGCATCGAATGTGAATTCAAGACAAACATCGAGTCATATTTAAGTAGGCACGTGAAAAGAAAACATCTTAAAGGAAATTGTTATAAATGCGTGGAGTGTGAATTCAAAACATACTGCAAGTCACATTTAGGAAAACACATAAAAGTAAAACATATACAAAATGATTATAAATGCGTGGAGTGCGGATTCAAGACAAACTACAAGTCAGGTTTAGAACGGCATATAAAATCAAAACATCTTAAAGCAAATGATTATAAATGCATGGAGTGTGACTACAAGACAAACATCAAGTCGTATTTACGAGTGCATATAAAAGCAAAACATCTTAAAGCAAATGATTATAAATGCATCGAGTGTGAATTCAAGACAAACATCAAGTCATATTTAAATAGACACGTGAAAGCAAAACATCTTAAAGGAAATGATTATCAATGCATGGAGTGTGACTTCAAGACGAAGTACAAGTCAAACTTAGAGAGTCATAGAAAAGCAAAGCATTATAATAAAAATTAG
- Protein Sequence
- MGHSLPKDGVERCSSERRKVRKWKRRIFKCTQCKFRTKYGADFRHHTNVHCEVKIYKCGICHRRYKTKESLKTHVLKNHVKDEVRGIQKYTTCDYFKANIKERSPRSHGEKQRQRAKCKFQTRNKLRLKSLVRRIHLNRRKYKCLNCEFKTYYRSYLEKHIKIKHLMETNYKCSERENEGNYKSRLVGHKNANHFKQKDCRCAEGEFNTHKKSYPSKPMKAKHLKENAYKCMECEFKTYYKSSLERHKNVNHLKEIDYKCMECEFKTYHKSSLERHKNINHLKEIDYKCMECEFKTYYKSHLERHIKVKHLKANDYKCMKCEYKTNYKSYLKVHINAKHVNDNEYKCMECEYKTNYKSHLERHIKVKHLKANDYKCMKCEFKTSDKSHLQVHINAKHVNDNEYKCVECEFKTNYKSHLARHIKVKHLKANDYKCMKCEYKTNYKSYLKVHINAKHVNDNEYKCMECEYKTNYKSYLKTNYKPHLERHIKVKHLKANDYKCMKCEYKTNYKSNLENHRKARHLNEMDYKCTECEFKTNYKSTLEAHVKTKHLNENEYKCMECEFKTNYKSHLARHIKVKHLKENDYKCMECEYKTNYKSYLSRHLKRKHLKGNDYKCIECEFKTNIESYLSRHVKRKHLKGNCYKCVECEFKTYCKSHLGKHIKVKHIQNDYKCVECGFKTNYKSGLERHIKSKHLKANDYKCMECDYKTNIKSYLRVHIKAKHLKANDYKCIECEFKTNIKSYLNRHVKAKHLKGNDYQCMECDFKTKYKSNLESHRKAKHYNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00990650;
- 90% Identity
- iTF_00990132;
- 80% Identity
- -