Mmel150065.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melolontha melolontha
Gene Symbol
-
Assembly
GCA_935421255.1
Location
CAKXYX010001720.1:17195-18823[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.002 0.23 15.4 2.9 1 23 19 42 19 42 0.97
2 16 0.08 9.4 10.4 1.3 1 23 101 124 101 124 0.97
3 16 0.029 3.4 11.7 4.9 1 23 130 153 130 153 0.96
4 16 6.9e-05 0.008 20.0 1.1 1 23 159 182 159 182 0.98
5 16 0.0089 1 13.4 4.5 1 23 188 211 188 211 0.98
6 16 9.2e-05 0.011 19.6 1.2 1 23 217 240 217 240 0.98
7 16 0.04 4.7 11.3 3.5 1 23 246 269 246 269 0.98
8 16 0.0079 0.92 13.5 1.4 1 23 275 298 275 298 0.96
9 16 0.0024 0.28 15.2 2.5 1 23 304 327 304 327 0.97
10 16 0.059 6.9 10.8 1.8 1 23 333 356 333 357 0.93
11 16 0.029 3.4 11.8 3.1 1 23 362 386 362 386 0.97
12 16 0.0011 0.13 16.2 1.8 1 23 392 415 392 415 0.98
13 16 0.0031 0.37 14.8 3.3 1 23 421 444 421 444 0.96
14 16 0.0057 0.66 14.0 0.8 1 23 450 473 450 473 0.96
15 16 0.0053 0.62 14.1 4.9 1 23 479 502 479 502 0.98
16 16 0.0053 0.62 14.1 4.9 1 23 508 531 508 531 0.98

Sequence Information

Coding Sequence
ATGTACATCGCTGACTTCAGGCGCCACACTAACGAGCATTACGAGGTGAAAATGTACAAATGTGGAATTTGTCACAGAAGATACAAGGCGAAGGAATCTCTCAAGACGCACGTGTTAAAAAATCATATTAACAATGAAGGAAGAAGTATCCAAAAATACACTACCTGTTACAACTTCAAAGCAAATACTAAAAATATAAAGGAGAGATCTTCATATTCACATGATGGCGAAAAACACTGTCAAACTAGGAAATGTTATTTAAAATCACTTATAAAAATGACACATCCGAATACAGGCAAATATAAGTGCGCAAATTGCGCGTTTAGGACATACTACAGGGGATATTTAGAAAGACACATCAAAATAAAACATCTAATTGAAGGTAATTACAAATGTTCAGAGTGTGAATTCAAGACAAAGCACAAGTCATGTTTAGCAGTCCATATTAAGGCAAAACATCTCAAGCAAAAGGATTATAAATGCACCGAATGTGAATATATGACAACTCGCAAGGCAGACTTAAACGTGCACATAAAAAGAAAACATCTGACACAAAAGGATTATAAATGCACAGAATGTCAATACAAGACCCACTTCCAGTCATATTTAGAAGTACATATAAAGACAAAACATCTCAAACAAAGTGATTATAAATGCATGGAGTGTGAATATATGACAAATCGCAAGTCAAATTTGAAAGTGCACATAGAAACAAAACATCTTAAACTAAATGATTATAAATGCATGGAGTGTGAATTCAAAACAAAGTACAAGTTACATTTAAAAGTACATATAAAATCAATACATCTAAACGAAAACGATTATAAATGCATGGAGTGTGAATACAAGACATATTACAAGTCAAAATTGGAAGCACACATAAAAGCGAAACATCTGAAAGAACATGATTATAAGTGCGTGGAGTGTGAATACCAGACAAATTATAAAGGACACTTACAGAAACACATAAGAGGGAAACATCTTAAACAAAACGATTATAAATGCACAGAGTGTGAATTCAAGTCAAGCTACAAGTCAAGTTTGGATGTACACCTAGCGGCAAAACATCATAAAGAAAGTGATTATAAATGCCCAGAGTGTGATGAATTCAAGACAAACTACAAGTCACATTTAAGAGAACATATAAAATCAAAACATCTTAAAGAAAATAATTATAAATGCTTAGAGTGTGAGTACAAGACAAATCGCAAGTCAGACTTTGAAACACACATAAAAGTAAAACATCTTAAACAAAATAATTATAAATGCACCGAGTGTGAATTCAAGACATTTTACAAGTCATATTTACAAGTGCATATAAAAACAAAACACCTCCAGGAAAATGTTTATAAGTGCGCTGAGTGTGAATTCAAGACAAACTACAAGTCAAGTTTAGAAATACACATAAAAGGAAAACATCTTAAAGAAAACGATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGTCATGTTTACAAGTACACATAAGGAGAAAACATCTTAAAGAAAAGGATTATAAATGCACAGAGTGTGAATTCAGGACAAACTACAAGTCATGTTTACAAGTACACATAAGAAGAAAACATTTGAAACAAGATGATTTTAAAATGCATGGAGCTTGA
Protein Sequence
MYIADFRRHTNEHYEVKMYKCGICHRRYKAKESLKTHVLKNHINNEGRSIQKYTTCYNFKANTKNIKERSSYSHDGEKHCQTRKCYLKSLIKMTHPNTGKYKCANCAFRTYYRGYLERHIKIKHLIEGNYKCSECEFKTKHKSCLAVHIKAKHLKQKDYKCTECEYMTTRKADLNVHIKRKHLTQKDYKCTECQYKTHFQSYLEVHIKTKHLKQSDYKCMECEYMTNRKSNLKVHIETKHLKLNDYKCMECEFKTKYKLHLKVHIKSIHLNENDYKCMECEYKTYYKSKLEAHIKAKHLKEHDYKCVECEYQTNYKGHLQKHIRGKHLKQNDYKCTECEFKSSYKSSLDVHLAAKHHKESDYKCPECDEFKTNYKSHLREHIKSKHLKENNYKCLECEYKTNRKSDFETHIKVKHLKQNNYKCTECEFKTFYKSYLQVHIKTKHLQENVYKCAECEFKTNYKSSLEIHIKGKHLKENDYKCTECEFRTNYKSCLQVHIRRKHLKEKDYKCTECEFRTNYKSCLQVHIRRKHLKQDDFKMHGA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-